HL_7PWO_038

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CCUCGG

Length

6 nucleotides

Bulged bases

7PWO|1|1|U|1556

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PWO_038 not in the Motif Atlas

Homologous match to HL_5TBW_043

Geometric discrepancy: 0.0829

The information below is about HL_5TBW_043

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

7PWO|1|1|C|1554
7PWO|1|1|C|1555
7PWO|1|1|U|1556
7PWO|1|1|C|1557
7PWO|1|1|G|1558
7PWO|1|1|G|1559

Current chains

Chain 1

rRNA 28S

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain n1

Ribosomal protein eL41

Chain p2

Ribosomal protein L37a