HL_7PWO_043

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

AGCGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PWO_043 not in the Motif Atlas

Geometric match to HL_3SUX_002

Geometric discrepancy: 0.1072

The information below is about HL_3SUX_002

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

7PWO|1|1|A|1707
7PWO|1|1|G|1708
7PWO|1|1|C|1709
7PWO|1|1|G|1710
7PWO|1|1|A|1711
7PWO|1|1|U|1712

Current chains

Chain 1

rRNA 28S

Nearby chains

Chain i2

Ribosomal protein L36-1

Chain o2

Ribosomal protein L44