HL_7PWO_046

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

7PWO|1|1|A|1859, 7PWO|1|1|A|1860, 7PWO|1|1|C|1861

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PWO_046 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.0923

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

7PWO|1|1|G|1856
7PWO|1|1|G|1857
7PWO|1|1|G|1858
7PWO|1|1|A|1859
7PWO|1|1|A|1860
7PWO|1|1|C|1861
7PWO|1|1|G|1862
7PWO|1|1|G|1863
7PWO|1|1|G|1864
7PWO|1|1|C|1865

Current chains

Chain 1

rRNA 28S

Nearby chains

Chain B2

Ribosomal protein L3

Chain e2

Ribosomal protein L32