HL_7PWO_048

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GGUCGCGC

Length

8 nucleotides

Bulged bases

7PWO|1|1|C|2007, 7PWO|1|1|C|2009, 7PWO|1|1|G|2010

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PWO_048 not in the Motif Atlas

Geometric match to HL_3AKZ_010

Geometric discrepancy: 0.3582

The information below is about HL_3AKZ_010

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20490.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

13

Unit IDs

7PWO|1|1|G|2004
7PWO|1|1|G|2005
7PWO|1|1|U|2006
7PWO|1|1|C|2007
7PWO|1|1|G|2008
7PWO|1|1|C|2009
7PWO|1|1|G|2010
7PWO|1|1|C|2011

Current chains

Chain 1

rRNA 28S

Nearby chains

Chain A2

Ribosomal protein L2

Chain G2

60S ribosomal protein L7a

Chain X2

Ribosomal protein L23A