HL_7PWO_052

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CAGAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PWO_052 not in the Motif Atlas

Homologous match to HL_5TBW_057

Geometric discrepancy: 0.1774

The information below is about HL_5TBW_057

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

26

Unit IDs

7PWO|1|1|C|2116
7PWO|1|1|A|2117
7PWO|1|1|G|2118
7PWO|1|1|A|2119
7PWO|1|1|A|2120
7PWO|1|1|G|2121
7PWO|1|1|G|2122
7PWO|1|1|G|2123

Current chains

Chain 1

rRNA 28S

Nearby chains

Chain I2

Ribosomal protein L10

Chain T2

Ribosomal protein L21

Chain o2

Ribosomal protein L44