HL_7PWO_060

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CGGAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PWO_060 not in the Motif Atlas

Geometric match to HL_3OXE_002

Geometric discrepancy: 0.2034

The information below is about HL_3OXE_002

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37569.4

Basepair signature

cWW-F-F-F

Number of instances in this motif group

10

Unit IDs

7PWO|1|1|C|2442
7PWO|1|1|G|2443
7PWO|1|1|G|2445
7PWO|1|1|A|2446
7PWO|1|1|G|2447

Current chains

Chain 1

rRNA 28S

Nearby chains

Chain H2

Ribosomal protein L6

Chain V2

Ribosomal protein L23

Chain m2

Ubiquitin/Ribosomal protein L40e