HL_7PWO_064

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GAGGACCAC

Length

9 nucleotides

Bulged bases

7PWO|1|1|A|2616

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PWO_064 not in the Motif Atlas

Geometric match to HL_7RQB_068

Geometric discrepancy: 0.1388

The information below is about HL_7RQB_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.1

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

7PWO|1|1|G|2615
7PWO|1|1|A|2616
7PWO|1|1|G|2617
7PWO|1|1|G|2618
7PWO|1|1|A|2619
7PWO|1|1|C|2620
7PWO|1|1|C|2621
7PWO|1|1|A|2622
7PWO|1|1|C|2623

Current chains

Chain 1

rRNA 28S

Nearby chains

Chain B2

Ribosomal protein L3

Chain P2

Ribosomal protein L17