HL_7PWO_067

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GCAACC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PWO_067 not in the Motif Atlas

Geometric match to HL_5X2G_001

Geometric discrepancy: 0.1603

The information below is about HL_5X2G_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

7PWO|1|2|G|138
7PWO|1|2|C|139
7PWO|1|2|A|140
7PWO|1|2|A|141
7PWO|1|2|C|142
7PWO|1|2|C|143

Current chains

Chain 2

rRNA 18S

Nearby chains

Chain G1

40S ribosomal protein S6