HL_7PWO_070

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

AUCAGGGU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PWO_070 not in the Motif Atlas

Geometric match to HL_4WF9_053

Geometric discrepancy: 0.2834

The information below is about HL_4WF9_053

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

7PWO|1|2|A|279
7PWO|1|2|U|280
7PWO|1|2|C|281
7PWO|1|2|A|282
7PWO|1|2|G|283
7PWO|1|2|G|284
7PWO|1|2|G|285
7PWO|1|2|U|286

Current chains

Chain 2

rRNA 18S

Nearby chains

Chain C1

Ribosomal protein S2

Chain J1

Ribosomal protein S9

Chain L1

SSU ribosomal protein S17P

Chain W1

Ribosomal protein S15A

Chain X1

Ribosomal protein S23