HL_7PWO_072

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

7PWO|1|2|A|328

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PWO_072 not in the Motif Atlas

Homologous match to HL_4V88_196

Geometric discrepancy: 0.1854

The information below is about HL_4V88_196

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

7PWO|1|2|C|326
7PWO|1|2|C|327
7PWO|1|2|A|328
7PWO|1|2|A|329
7PWO|1|2|G|330
7PWO|1|2|G|331

Current chains

Chain 2

rRNA 18S

Nearby chains

Chain G1

40S ribosomal protein S6