HL_7PWO_076

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CGCUCCAGG

Length

9 nucleotides

Bulged bases

7PWO|1|2|G|545

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PWO_076 not in the Motif Atlas

Homologous match to HL_4V88_203

Geometric discrepancy: 0.2361

The information below is about HL_4V88_203

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

7PWO|1|2|C|544
7PWO|1|2|G|545
7PWO|1|2|C|546
7PWO|1|2|U|547
7PWO|1|2|C|548
7PWO|1|2|C|549
7PWO|1|2|A|550
7PWO|1|2|G|551
7PWO|1|2|G|552

Current chains

Chain 2

rRNA 18S

Nearby chains

Chain E1

40S ribosomal protein S4

Chain J1

Ribosomal protein S9

Chain Y1

Ribosomal protein S24