HL_7PWO_077

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CCCGGCGCG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PWO_077 not in the Motif Atlas

Geometric match to HL_4LCK_002

Geometric discrepancy: 0.2391

The information below is about HL_4LCK_002

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_11974.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

7PWO|1|2|C|592
7PWO|1|2|C|593
7PWO|1|2|C|594
7PWO|1|2|G|595
7PWO|1|2|G|596
7PWO|1|2|C|597
7PWO|1|2|G|598
7PWO|1|2|C|599
7PWO|1|2|G|600

Current chains

Chain 2

rRNA 18S

Nearby chains

Chain H1

40S ribosomal protein S7

Chain L1

SSU ribosomal protein S17P