HL_7PWO_079

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CGCAGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PWO_079 not in the Motif Atlas

Homologous match to HL_4V88_207

Geometric discrepancy: 0.0899

The information below is about HL_4V88_207

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7PWO|1|2|C|689
7PWO|1|2|G|690
7PWO|1|2|C|691
7PWO|1|2|A|692
7PWO|1|2|G|693
7PWO|1|2|G|694

Current chains

Chain 2

rRNA 18S

Nearby chains

Chain N1

Ribosomal protein S13

Chain a1

40S ribosomal protein S26