HL_7PWO_085

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CGCGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PWO_085 not in the Motif Atlas

Geometric match to HL_4LFB_024

Geometric discrepancy: 0.1026

The information below is about HL_4LFB_024

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

7PWO|1|2|C|1036
7PWO|1|2|G|1037
7PWO|1|2|C|1038
7PWO|1|2|G|1039
7PWO|1|2|A|1040
7PWO|1|2|G|1041

Current chains

Chain 2

rRNA 18S

Nearby chains

Chain A1

40S ribosomal protein SA

Chain C1

Ribosomal protein S2