HL_7PWO_094

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CGUUCCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PWO_094 not in the Motif Atlas

Geometric match to HL_7A0S_011

Geometric discrepancy: 0.1179

The information below is about HL_7A0S_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.9

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

7PWO|1|3|C|36
7PWO|1|3|G|37
7PWO|1|3|U|38
7PWO|1|3|U|39
7PWO|1|3|C|40
7PWO|1|3|C|41
7PWO|1|3|G|42

Current chains

Chain 3

rRNA 5S

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain D2

Ribosomal protein L5

Chain J2

Ribosomal protein L11