HL_7PWO_098

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CAGCG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PWO_098 not in the Motif Atlas

Geometric match to HL_4WF9_003

Geometric discrepancy: 0.1686

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.9

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

7PWO|1|42|C|108
7PWO|1|42|A|109
7PWO|1|42|G|110
7PWO|1|42|C|111
7PWO|1|42|G|112

Current chains

Chain 42

rRNA 5.8S

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain X2

Ribosomal protein L23A

Chain j2

Ribosomal protein L37

Chain l2

Ribosomal protein L39