HL_7PZY_018

3D structure

PDB id

7PZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant Candida albicans 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

CAUUAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PZY_018 not in the Motif Atlas

Homologous match to HL_8C3A_017

Geometric discrepancy: 0.1088

The information below is about HL_8C3A_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_54152.1

Basepair signature

cWW-F-F

Number of instances in this motif group

5

Unit IDs

7PZY|1|1|C|729
7PZY|1|1|A|730
7PZY|1|1|U|731
7PZY|1|1|U|732
7PZY|1|1|A|733
7PZY|1|1|G|734

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain y

Ribosomal 60S subunit protein L18A