Motif HL_54152.1 Version HL_54152.1 of this group appears in releases 3.89 to 3.90
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 1-4 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_8UO6_003 | 8UO6 | 0.8001 | 3 | A | HIV-1 Rev Response Element Stem-Loop II with tRNA scaffold | A | 77 | A | 78 | U | 82 | U | 83 | cWW |
| 2 | HL_8C3A_017 | 8C3A | 0.7308 | 2 | 1 | LSU rRNA | C | 729 | A | 730 | A | 733 | G | 734 | cWW |
| 3 | HL_3NDB_001 | 3NDB | 0.5646 | 2 | M | SRP RNA | U | 162 | G | 163 | G | 166 | G | 167 | cWW |
| 4 | HL_2A64_001 | 2A64 | 0.0000 | 2 | A | ribonuclease P RNA | G | 31 | G | 32 | U | 35 | C | 36 | cWW |
| 5 | HL_6N5P_002 | 6N5P | 0.4305 | 3 | A | cyclic di-AMP riboswitch | G | 58 | U | 59 | G | 63 | C | 64 | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AAUUAUU | 1 |
| CAUUAG | 1 |
| UGUAGG | 1 |
| GGUUUC | 1 |
| GUGAAGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUUAU | 1 |
| AUUA | 1 |
| GUAG | 1 |
| GUUU | 1 |
| UGAAG | 1 |
Coloring options: