HL_7PZY_024

3D structure

PDB id

7PZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant Candida albicans 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

UGAAAUG

Length

7 nucleotides

Bulged bases

7PZY|1|1|U|1024

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PZY_024 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.3703

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

7PZY|1|1|U|1019
7PZY|1|1|G|1020
7PZY|1|1|A|1021
7PZY|1|1|A|1022
7PZY|1|1|A|1023
7PZY|1|1|U|1024
7PZY|1|1|G|1025

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain Q

Ribosomal 40S subunit protein S15

Chain i

HABP4_PAI-RBP1 domain-containing protein

Chain s

Ribosomal 60S subunit protein L11B