HL_7PZY_025

3D structure

PDB id

7PZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant Candida albicans 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

7PZY|1|1|U|1077

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PZY_025 not in the Motif Atlas

Homologous match to HL_8C3A_024

Geometric discrepancy: 0.0534

The information below is about HL_8C3A_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

7PZY|1|1|C|1072
7PZY|1|1|U|1073
7PZY|1|1|U|1074
7PZY|1|1|A|1075
7PZY|1|1|A|1076
7PZY|1|1|U|1077
7PZY|1|1|U|1078
7PZY|1|1|G|1079

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 2

Ribosomal 60S subunit protein L21A

Chain AC

60S ribosomal protein L29

Chain m

Ribosomal 60S subunit protein L5