HL_7PZY_028

3D structure

PDB id

7PZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant Candida albicans 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

7PZY|1|1|A|1241

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PZY_028 not in the Motif Atlas

Geometric match to HL_5HR7_005

Geometric discrepancy: 0.2815

The information below is about HL_5HR7_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50006.5

Basepair signature

cWW-F-F

Number of instances in this motif group

6

Unit IDs

7PZY|1|1|C|1235
7PZY|1|1|A|1236
7PZY|1|1|U|1237
7PZY|1|1|G|1238
7PZY|1|1|G|1239
7PZY|1|1|A|1240
7PZY|1|1|A|1241
7PZY|1|1|G|1242
7PZY|1|1|U|1243
7PZY|1|1|C|1244
7PZY|1|1|G|1245

Current chains

Chain 1

25S ribosomal RNA

Nearby chains