HL_7PZY_033

3D structure

PDB id

7PZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant Candida albicans 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

AGCAGUU

Length

7 nucleotides

Bulged bases

7PZY|1|1|G|1503, 7PZY|1|1|U|1507

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PZY_033 not in the Motif Atlas

Homologous match to HL_8C3A_032

Geometric discrepancy: 0.0621

The information below is about HL_8C3A_032

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_40756.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

7PZY|1|1|A|1502
7PZY|1|1|G|1503
7PZY|1|1|C|1504
7PZY|1|1|A|1505
7PZY|1|1|G|1506
7PZY|1|1|U|1507
7PZY|1|1|U|1508

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain x

Ribosomal 60S subunit protein L17B

Chain z

Ribosomal protein L19