HL_7PZY_054

3D structure

PDB id

7PZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant Candida albicans 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

GGUCAAAC

Length

8 nucleotides

Bulged bases

7PZY|1|1|C|2517

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PZY_054 not in the Motif Atlas

Homologous match to HL_8C3A_053

Geometric discrepancy: 0.1585

The information below is about HL_8C3A_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19906.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7PZY|1|1|G|2514
7PZY|1|1|G|2515
7PZY|1|1|U|2516
7PZY|1|1|C|2517
7PZY|1|1|A|2518
7PZY|1|1|A|2519
7PZY|1|1|A|2520
7PZY|1|1|C|2521

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain C

40S ribosomal protein S1

Chain p

60S ribosomal protein L8