HL_7PZY_082

3D structure

PDB id

7PZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant Candida albicans 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

7PZY|1|A|U|156, 7PZY|1|A|U|157

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PZY_082 not in the Motif Atlas

Geometric match to HL_4V88_188

Geometric discrepancy: 0.1445

The information below is about HL_4V88_188

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7PZY|1|A|G|152
7PZY|1|A|U|153
7PZY|1|A|A|154
7PZY|1|A|A|155
7PZY|1|A|U|156
7PZY|1|A|U|157
7PZY|1|A|C|158

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain H

40S ribosomal protein S6

Chain Z

40S ribosomal protein S24