HL_7PZY_083

3D structure

PDB id

7PZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant Candida albicans 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

UGUUUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PZY_083 not in the Motif Atlas

Geometric match to HL_3DIL_004

Geometric discrepancy: 0.3897

The information below is about HL_3DIL_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78347.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

8

Unit IDs

7PZY|1|A|U|188
7PZY|1|A|G|189
7PZY|1|A|U|190
7PZY|1|A|U|191
7PZY|1|A|U|192
7PZY|1|A|G|193

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain J

40S ribosomal protein S8