HL_7PZY_110

3D structure

PDB id

7PZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant Candida albicans 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PZY_110 not in the Motif Atlas

Geometric match to HL_4V88_218

Geometric discrepancy: 0.0821

The information below is about HL_4V88_218

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7PZY|1|A|C|1488
7PZY|1|A|G|1489
7PZY|1|A|A|1490
7PZY|1|A|G|1491
7PZY|1|A|A|1492
7PZY|1|A|G|1493

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain Q

Ribosomal 40S subunit protein S15

Chain T

Ribosomal 40S subunit protein S18B

Chain U

Ribosomal 40S subunit protein S19A