HL_7Q08_028

3D structure

PDB id

7Q08 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with cycloheximide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.56 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

7Q08|1|1|A|1241

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7Q08_028 not in the Motif Atlas

Geometric match to HL_5U3G_001

Geometric discrepancy: 0.2755

The information below is about HL_5U3G_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

7Q08|1|1|C|1235
7Q08|1|1|A|1236
7Q08|1|1|U|1237
7Q08|1|1|G|1238
7Q08|1|1|G|1239
7Q08|1|1|A|1240
7Q08|1|1|A|1241
7Q08|1|1|G|1242
7Q08|1|1|U|1243
7Q08|1|1|C|1244
7Q08|1|1|G|1245

Current chains

Chain 1

25S ribosomal RNA

Nearby chains