7Q08 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7Q08_001 | 1/1/37:44 | No text annotation | homologous HL_8C3A_001 NA | |
| HL_7Q08_002 | 1/1/68:73 | No text annotation | homologous HL_8C3A_002 NA | |
| HL_7Q08_003 | 1/1/89:95 | No text annotation | homologous HL_8C3A_003 NA | |
| HL_7Q08_004 | 1/1/131:135 | No text annotation | homologous HL_8C3A_004 NA | |
| HL_7Q08_005 | 1/1/193:200 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_005 NA | |
| HL_7Q08_006 | 1/1/207:211 | No text annotation | homologous HL_8C3A_006 NA | |
| HL_7Q08_007 | 1/1/215:223 | T-loop with unstacked turn | homologous HL_8C3A_007 NA | |
| HL_7Q08_008 | 1/1/278:287 | No text annotation | homologous HL_8C3A_008 NA | |
| HL_7Q08_009 | 1/1/303:312 | Pseudoknot geometry | homologous HL_8C3A_009 NA | |
| HL_7Q08_010 | 1/1/357:362 | GNRA | homologous HL_8C3A_010 NA | |
| HL_7Q08_011 | 1/1/382:387 | GNRA | homologous HL_8C3A_011 NA | |
| HL_7Q08_013 | 1/1/539:546 | No text annotation | homologous HL_8C3A_012 NA | |
| HL_7Q08_014 | 1/1/597:602 | No text annotation | homologous HL_8C3A_013 NA | |
| HL_7Q08_015 | 1/1/638:647 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_014 NA | |
| HL_7Q08_114 | 1/1/685:691 | No text annotation | geometric HL_5J7L_151 HL_80922.2 | |
| HL_7Q08_017 | 1/1/705:710 | GNRA | homologous HL_8C3A_016 NA | |
| HL_7Q08_018 | 1/1/729:734 | No text annotation | homologous HL_8C3A_017 NA | |
| HL_7Q08_019 | 1/1/759:764 | No text annotation | geometric HL_5TBW_018 NA | |
| HL_7Q08_020 | 1/1/840:845 | GNRA | homologous HL_8C3A_019 NA | |
| HL_7Q08_021 | 1/1/872:881 | No text annotation | homologous HL_8C3A_020 NA | |
| HL_7Q08_022 | 1/1/906:914 | No text annotation | homologous HL_8C3A_021 NA | |
| HL_7Q08_023 | 1/1/954:959 | Externally structured | homologous HL_8C3A_022 NA | |
| HL_7Q08_115 | 1/1/1017:1027 | Anticodon loop related | homologous HL_8C3A_023 NA | |
| HL_7Q08_024 | 1/1/1019:1025 | No text annotation | ||
| HL_7Q08_025 | 1/1/1072:1079 | No text annotation | geometric HL_5TBW_024 NA | |
| HL_7Q08_026 | 1/1/1122:1128 | GNRA | homologous HL_8C3A_025 NA | |
| HL_7Q08_027 | 1/1/1144:1151 | No text annotation | homologous HL_8C3A_026 NA | |
| HL_7Q08_028 | 1/1/1235:1245 | No text annotation | geometric HL_5U3G_001 HL_75660.5 | |
| HL_7Q08_029 | 1/1/1262:1271 | No text annotation | geometric HL_3SKL_006 NA | |
| HL_7Q08_030 | 1/1/1343:1353 | No text annotation | homologous HL_8C3A_029 NA | |
| HL_7Q08_031 | 1/1/1399:1404 | GNRA | homologous HL_8C3A_030 NA | |
| HL_7Q08_032 | 1/1/1458:1466 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_031 NA | |
| HL_7Q08_033 | 1/1/1502:1508 | Pseudoknot geometry with 3' bulge | homologous HL_8C3A_032 NA | |
| HL_7Q08_034 | 1/1/1540:1545 | GNRA variation | homologous HL_8C3A_033 NA | |
| HL_7Q08_035 | 1/1/1562:1569 | No text annotation | homologous HL_8C3A_034 NA | |
| HL_7Q08_036 | 1/1/1595:1604 | No text annotation | homologous HL_8C3A_035 NA | |
| HL_7Q08_037 | 1/1/1630:1635 | GNRA | homologous HL_8C3A_036 NA | |
| HL_7Q08_038 | 1/1/1676:1684 | No text annotation | homologous HL_8C3A_037 NA | |
| HL_7Q08_039 | 1/1/1715:1721 | No text annotation | homologous HL_8C3A_038 NA | |
| HL_7Q08_040 | 1/1/1756:1761 | No text annotation | homologous HL_8C3A_039 NA | |
| HL_7Q08_041 | 1/1/1788:1792 | No text annotation | homologous HL_8C3A_040 NA | |
| HL_7Q08_042 | 1/1/1840:1847 | No text annotation | homologous HL_8C3A_041 NA | |
| HL_7Q08_043 | 1/1/1858:1864 | GNRA | homologous HL_8C3A_042 NA | |
| HL_7Q08_044 | 1/1/1919:1924 | UNCG | homologous HL_8C3A_043 NA | |
| HL_7Q08_046 | 1/1/2088:2092 | No text annotation | homologous HL_8C3A_045 NA | |
| HL_7Q08_047 | 1/1/2113:2123 | No text annotation | homologous HL_8C3A_046 NA | |
| HL_7Q08_048 | 1/1/2142:2148 | GNRA | homologous HL_8C3A_047 NA | |
| HL_7Q08_049 | 1/1/2198:2203 | GNRA | homologous HL_8C3A_048 NA | |
| HL_7Q08_050 | 1/1/2231:2241 | No text annotation | homologous HL_8C3A_049 NA | |
| HL_7Q08_051 | 1/1/2270:2278 | No text annotation | homologous HL_8C3A_050 NA | |
| HL_7Q08_052 | 1/1/2347:2356 | No text annotation | homologous HL_8C3A_051 NA | |
| HL_7Q08_054 | 1/1/2514:2521 | No text annotation | homologous HL_8C3A_053 NA | |
| HL_7Q08_055 | 1/1/2543:2547 | No text annotation | homologous HL_8C3A_054 NA | |
| HL_7Q08_056 | 1/1/2588:2596 | No text annotation | homologous HL_8C3A_055 NA | |
| HL_7Q08_057 | 1/1/2605:2617 | No text annotation | homologous HL_8C3A_056 NA | |
| HL_7Q08_058 | 1/1/2645:2653 | No text annotation | homologous HL_8C3A_057 NA | |
| HL_7Q08_059 | 1/1/2665:2672 | Pseudoknot geometry | homologous HL_8C3A_058 NA | |
| HL_7Q08_060 | 1/1/2696:2704 | No text annotation | homologous HL_8C3A_059 NA | |
| HL_7Q08_061 | 1/1/2716:2721 | GNRA | homologous HL_8C3A_060 NA | |
| HL_7Q08_062 | 1/1/2748:2756 | Pseudoknot geometry | homologous HL_8C3A_061 NA | |
| HL_7Q08_063 | 1/1/2812:2820 | No text annotation | homologous HL_8C3A_062 NA | |
| HL_7Q08_064 | 1/1/2869:2876 | No text annotation | homologous HL_8C3A_063 NA | |
| HL_7Q08_065 | 1/1/2892:2898 | No text annotation | geometric HL_5TBW_063 NA | |
| HL_7Q08_066 | 1/1/2935:2940 | GNRA | homologous HL_8C3A_065 NA | |
| HL_7Q08_067 | 1/1/2997:3002 | GNRA | geometric HL_4V9F_066 HL_37824.8 | |
| HL_7Q08_068 | 1/1/3040:3045 | Ribsomal LSU H95 | homologous HL_8C3A_067 NA | |
| HL_7Q08_069 | 1/1/3082:3096 | No text annotation | homologous HL_8C3A_068 NA | |
| HL_7Q08_070 | 1/1/3161:3166 | No text annotation | geometric HL_361D_002 HL_13963.3 | |
| HL_7Q08_071 | 1/1/3205:3212 | No text annotation | homologous HL_8C3A_070 NA | |
| HL_7Q08_072 | 1/1/3268:3276 | No text annotation | geometric HL_5TBW_070 NA | |
| HL_7Q08_073 | 1/1/3315:3318 | Mini UNCG | homologous HL_8C3A_072 NA | |
| HL_7Q08_116 | 1/3/32:45 | No text annotation | homologous HL_8C3A_228 NA | |
| HL_7Q08_074 | 1/3/36:41 | No text annotation | geometric HL_5TBW_185 NA | |
| HL_7Q08_075 | 1/3/88:93 | GNRA | homologous HL_4V9F_072 HL_37824.8 | |
| HL_7Q08_117 | 1/4/47:56 | Pseudoknot with intercalation | homologous HL_8C3A_229 NA | |
| HL_7Q08_076 | 1/4/69:89 | No text annotation | homologous HL_8C3A_230 NA | |
| HL_7Q08_077 | 1/4/108:114 | No text annotation | geometric HL_5TBW_075 NA | |
| HL_7Q08_078 | 1/4/124:129 | No text annotation | geometric HL_5TBW_076 NA | |
| HL_7Q08_079 | 1/A/7:17 | No text annotation | geometric HL_4V88_186 NA | |
| HL_7Q08_080 | 1/A/70:81 | No text annotation | geometric HL_4V9F_011 HL_75660.5 | |
| HL_7Q08_081 | 1/A/152:158 | GNRA related | geometric HL_4V88_188 NA | |
| HL_7Q08_082 | 1/A/188:193 | No text annotation | homologous HL_8C3A_195 NA | |
| HL_7Q08_083 | 1/A/241:248 | T-loop with 1 bulged base | geometric HL_4V88_191 NA | |
| HL_7Q08_084 | 1/A/274:277 | Mini UNCG | geometric HL_5TBW_071 NA | |
| HL_7Q08_085 | 1/A/328:336 | GNRA related | geometric HL_4V88_193 NA | |
| HL_7Q08_086 | 1/A/366:371 | No text annotation | geometric HL_4V88_194 NA | |
| HL_7Q08_087 | 1/A/391:402 | No text annotation | geometric HL_4V88_195 NA | |
| HL_7Q08_088 | 1/A/412:417 | UNCG | geometric HL_2HW8_001 HL_34617.5 | |
| HL_7Q08_089 | 1/A/448:454 | No text annotation | geometric HL_5TBW_006 NA | |
| HL_7Q08_090 | 1/A/518:530 | No text annotation | geometric HL_4V88_199 NA | |
| HL_7Q08_091 | 1/A/567:572 | GNRA variation | geometric HL_4V88_200 NA | |
| HL_7Q08_094 | 1/A/749:757 | No text annotation | geometric HL_4V88_203 NA | |
| HL_7Q08_095 | 1/A/762:767 | Mini UNCG | geometric HL_1ZBH_001 HL_56334.1 | |
| HL_7Q08_096 | 1/A/814:828 | No text annotation | ||
| HL_7Q08_097 | 1/A/885:894 | No text annotation | geometric HL_5J7L_015 HL_75293.5 | |
| HL_7Q08_098 | 1/A/922:927 | GNRA | geometric HL_4V88_207 NA | |
| HL_7Q08_099 | 1/A/982:992 | No text annotation | geometric HL_5J7L_017 HL_75293.5 | |
| HL_7Q08_118 | 1/A/1036:1052 | No text annotation | ||
| HL_7Q08_100 | 1/A/1040:1049 | No text annotation | geometric HL_8C3A_236 NA | |
| HL_7Q08_101 | 1/A/1069:1074 | GNRA | geometric HL_4V88_210 NA | |
| HL_7Q08_102 | 1/A/1106:1111 | GNRA | geometric HL_4LFB_020 HL_37824.8 | |
| HL_7Q08_103 | 1/A/1173:1182 | No text annotation | geometric HL_4V88_212 NA | |
| HL_7Q08_104 | 1/A/1223:1232 | Anticodon loop related | geometric HL_4V9F_032 HL_77082.1 | |
| HL_7Q08_105 | 1/A/1281:1286 | GNRA | geometric HL_4V9F_065 HL_37824.8 | |
| HL_7Q08_106 | 1/A/1294:1301 | No text annotation | geometric HL_4V88_215 NA | |
| HL_7Q08_107 | 1/A/1344:1349 | No text annotation | geometric HL_2Y8W_001 HL_81100.2 | |
| HL_7Q08_108 | 1/A/1382:1388 | GNRA | geometric HL_4V88_217 NA | |
| HL_7Q08_109 | 1/A/1488:1493 | GNRA | geometric HL_4V88_218 NA | |
| HL_7Q08_110 | 1/A/1537:1548 | No text annotation | geometric HL_4V88_219 NA | |
| HL_7Q08_111 | 1/A/1581:1589 | No text annotation | geometric HL_4V88_220 NA | |
| HL_7Q08_113 | 1/A/1765:1770 | No text annotation | geometric HL_5TBW_006 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7Q08_012 | No text annotation | ||
| HL_7Q08_016 | No text annotation | ||
| HL_7Q08_045 | No text annotation | ||
| HL_7Q08_053 | No text annotation | ||
| HL_7Q08_092 | No text annotation | ||
| HL_7Q08_093 | No text annotation | ||
| HL_7Q08_112 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7Q08_001 | 1/1/6:7, 1/4/150:152 | Single bulged C | homologous IL_8C3A_002 NA | |
| IL_7Q08_002 | 1/1/12:14, 1/4/144:145 | Single bulged U | homologous IL_8C3A_003 NA | |
| IL_7Q08_003 | 1/1/26:27, 1/1/55:57 | No text annotation | homologous IL_8C3A_004 NA | |
| IL_7Q08_004 | 1/1/30:37, 1/1/44:52 | tSH-tHW-tHH-tHS | geometric IL_5TBW_005 NA | |
| IL_7Q08_005 | 1/1/81:88, 1/1/96:102 | No text annotation | homologous IL_8C3A_006 NA | |
| IL_7Q08_006 | 1/1/122:123, 1/1/143:148 | No text annotation | homologous IL_8C3A_007 NA | |
| IL_7Q08_007 | 1/1/124:126, 1/1/140:142 | Isolated non-canonical cWW pair | homologous IL_8C3A_008 NA | |
| IL_7Q08_008 | 1/1/161:165, 1/1/256:259 | No text annotation | homologous IL_8C3A_009 NA | |
| IL_7Q08_009 | 1/1/168:169, 1/1/248:253 | No text annotation | homologous IL_8C3A_010 NA | |
| IL_7Q08_010 | 1/1/176:177, 1/1/238:241 | No text annotation | homologous IL_8C3A_011 NA | |
| IL_7Q08_011 | 1/1/177:178, 1/1/236:238 | Single stack bend | geometric IL_4C7O_002 IL_90729.1 | |
| IL_7Q08_012 | 1/1/188:190, 1/1/203:204 | Single bulged U | homologous IL_8C3A_013 NA | |
| IL_7Q08_013 | 1/1/337:339, 1/4/25:26 | Single bulged A | homologous IL_8C3A_014 NA | |
| IL_7Q08_014 | 1/1/376:379, 1/1/390:403 | No text annotation | homologous IL_8C3A_015 NA | |
| IL_7Q08_015 | 1/1/404:410, 1/4/13:19 | Triple sheared with non-canonical cWW | homologous IL_8C3A_016 NA | |
| IL_7Q08_016 | 1/1/439:442, 1/1/487:488 | Minor groove platform | homologous IL_8C3A_017 NA | |
| IL_7Q08_017 | 1/1/505:507, 1/1/578:579 | Single bulged A | homologous IL_8C3A_019 NA | |
| IL_7Q08_018 | 1/1/508:509, 1/1/575:577 | Single bulged A | homologous IL_8C3A_020 NA | |
| IL_7Q08_019 | 1/1/513:522, 1/1/564:571 | No text annotation | homologous IL_8C3A_021 NA | |
| IL_7Q08_020 | 1/1/527:534, 1/1/551:559 | No text annotation | homologous IL_8C3A_022 NA | |
| IL_7Q08_021 | 1/1/666:668, 1/1/788:790 | Isolated non-canonical cWW pair | homologous IL_8C3A_023 NA | |
| IL_7Q08_022 | 1/1/678:682, 1/1/694:698 | No text annotation | homologous IL_8C3A_024 NA | |
| IL_7Q08_023 | 1/1/723:726, 1/1/737:741 | No text annotation | homologous IL_8C3A_025 NA | |
| IL_7Q08_024 | 1/1/748:749, 1/1/775:777 | Single bulged A | homologous IL_8C3A_026 NA | |
| IL_7Q08_025 | 1/1/751:752, 1/1/771:773 | Single bulged U | homologous IL_8C3A_027 NA | |
| IL_7Q08_026 | 1/1/754:759, 1/1/764:769 | No text annotation | homologous IL_8C3A_028 NA | |
| IL_7Q08_027 | 1/1/799:801, 1/1/934:936 | Isolated non-canonical cWW pair | geometric IL_5TBW_027 NA | |
| IL_7Q08_028 | 1/1/801:805, 1/1/927:934 | No text annotation | homologous IL_8C3A_030 NA | |
| IL_7Q08_029 | 1/1/824:825, 1/1/891:893 | Single bulged A | homologous IL_8C3A_031 NA | |
| IL_7Q08_030 | 1/1/829:830, 1/1/855:857 | Single bulged G | homologous IL_8C3A_032 NA | |
| IL_7Q08_031 | 1/1/830:834, 1/1/851:855 | Triple sheared | geometric IL_5J7L_263 IL_50730.2 | |
| IL_7Q08_032 | 1/1/865:868, 1/1/884:886 | Major groove platform with extra cWW | homologous IL_8C3A_034 NA | |
| IL_7Q08_033 | 1/1/869:871, 1/1/882:883 | Single bulged U | homologous IL_8C3A_035 NA | |
| IL_7Q08_034 | 1/1/903:905, 1/1/915:919 | No text annotation | homologous IL_8C3A_036 NA | |
| IL_7Q08_035 | 1/1/950:952, 1/1/961:963 | Isolated non-canonical cWW pair | homologous IL_8C3A_037 NA | |
| IL_7Q08_036 | 1/1/965:966, 1/1/1107:1109 | No text annotation | homologous IL_8C3A_038 NA | |
| IL_7Q08_037 | 1/1/973:978, 1/1/1097:1100 | Kink-turn related | homologous IL_8C3A_039 NA | |
| IL_7Q08_038 | 1/1/979:981, 1/1/1095:1096 | Single bulged G | homologous IL_8C3A_040 NA | |
| IL_7Q08_039 | 1/1/987:993, 1/1/1048:1054 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_5TBW_038 NA | |
| IL_7Q08_040 | 1/1/993:994, 1/1/1046:1048 | Minor groove platform | homologous IL_8C3A_042 NA | |
| IL_7Q08_041 | 1/1/995:1000, 1/1/1042:1045 | C-loop with bulged stacked A's | homologous IL_8C3A_043 NA | |
| IL_7Q08_042 | 1/1/1002:1005, 1/1/1037:1040 | Tandem non-canonical cWW pairs | geometric IL_5TBW_041 NA | |
| IL_7Q08_043 | 1/1/1005:1007, 1/1/1035:1037 | Isolated non-canonical cWW pair | homologous IL_8C3A_045 NA | |
| IL_7Q08_044 | 1/1/1010:1014, 1/1/1030:1032 | Isolated non-canonical cWW with bulges | geometric IL_3KTW_002 NA | |
| IL_7Q08_046 | 1/1/1065:1067, 1/1/1083:1085 | Isolated non-canonical cWW pair | homologous IL_8C3A_047 NA | |
| IL_7Q08_047 | 1/1/1070:1072, 1/1/1079:1080 | Single bulged G | homologous IL_8C3A_048 NA | |
| IL_7Q08_048 | 1/1/1116:1118, 1/1/1132:1134 | Isolated non-canonical cWW pair | homologous IL_8C3A_049 NA | |
| IL_7Q08_050 | 1/1/1163:1167, 1/1/1324:1328 | UAA/GAN | homologous IL_8C3A_051 NA | |
| IL_7Q08_051 | 1/1/1169:1176, 1/1/1321:1322 | SSU/LSU pseudoknot | homologous IL_8C3A_052 NA | |
| IL_7Q08_052 | 1/1/1176:1178, 1/1/1320:1321 | Single bulged U | geometric IL_7RQB_038 NA | |
| IL_7Q08_053 | 1/1/1183:1190, 1/1/1310:1315 | No text annotation | homologous IL_8C3A_054 NA | |
| IL_7Q08_054 | 1/1/1190:1201, 1/1/1295:1310 | No text annotation | geometric IL_5TBW_052 NA | |
| IL_7Q08_055 | 1/1/1203:1205, 1/1/1292:1293 | Single bulged U | homologous IL_8C3A_056 NA | |
| IL_7Q08_056 | 1/1/1214:1222, 1/1/1279:1283 | Kink-turn | homologous IL_8C3A_057 NA | |
| IL_7Q08_252 | 1/1/1226:1228, 1/1/1252:1275 | No text annotation | ||
| IL_7Q08_057 | 1/1/1229:1234, 1/1/1246:1251 | No text annotation | ||
| IL_7Q08_058 | 1/1/1258:1262, 1/1/1271:1273 | Major groove platform with extra cWW | homologous IL_8C3A_059 NA | |
| IL_7Q08_059 | 1/1/1339:1342, 1/1/1354:1357 | Tandem non-canonical cWW pairs | homologous IL_8C3A_060 NA | |
| IL_7Q08_060 | 1/1/1372:1374, 1/1/1424:1427 | No text annotation | homologous IL_8C3A_061 NA | |
| IL_7Q08_061 | 1/1/1381:1383, 1/1/1416:1417 | Single bulged A | homologous IL_8C3A_062 NA | |
| IL_7Q08_062 | 1/1/1384:1391, 1/1/1411:1415 | Kink-turn | homologous IL_8C3A_063 NA | |
| IL_7Q08_063 | 1/1/1394:1397, 1/1/1406:1408 | Isolated non-canonical cWW pair | homologous IL_8C3A_064 NA | |
| IL_7Q08_064 | 1/1/1440:1446, 1/1/2332:2337 | No text annotation | homologous IL_8C3A_065 NA | |
| IL_7Q08_237 | 1/1/1497:1501, 1/1/1509:1511 | C-loop | homologous IL_8C3A_482 NA | |
| IL_7Q08_066 | 1/1/1528:1532, 1/1/1581:1586 | UAA/GAN | homologous IL_8C3A_067 NA | |
| IL_7Q08_067 | 1/1/1556:1558, 1/1/1573:1574 | Single bulged U | homologous IL_8C3A_068 NA | |
| IL_7Q08_068 | 1/1/1614:1617, 1/1/1820:1822 | No text annotation | homologous IL_8C3A_070 NA | |
| IL_7Q08_238 | 1/1/1619:1620, 1/1/1815:1818 | No text annotation | homologous IL_8C3A_483 NA | |
| IL_7Q08_070 | 1/1/1623:1627, 1/1/1807:1812 | No text annotation | geometric IL_5TBW_066 NA | |
| IL_7Q08_071 | 1/1/1641:1645, 1/1/1802:1806 | Triple sheared | geometric IL_5TBW_067 NA | |
| IL_7Q08_072 | 1/1/1657:1659, 1/1/1782:1784 | Isolated non-canonical cWW pair | homologous IL_8C3A_074 NA | |
| IL_7Q08_073 | 1/1/1665:1666, 1/1/1774:1776 | Single bulged C | geometric IL_5TBW_069 NA | |
| IL_7Q08_074 | 1/1/1666:1667, 1/1/1772:1774 | Single stack bend | homologous IL_8C3A_076 NA | |
| IL_7Q08_075 | 1/1/1690:1694, 1/1/1743:1748 | No text annotation | homologous IL_8C3A_077 NA | |
| IL_7Q08_076 | 1/1/1698:1703, 1/1/1733:1739 | No text annotation | homologous IL_8C3A_078 NA | |
| IL_7Q08_077 | 1/1/1707:1713, 1/1/1723:1729 | No text annotation | homologous IL_8C3A_079 NA | |
| IL_7Q08_078 | 1/1/1879:1885, 1/1/2324:2327 | No text annotation | homologous IL_8C3A_080 NA | |
| IL_7Q08_079 | 1/1/1891:1893, 1/1/2316:2318 | No text annotation | homologous IL_8C3A_081 NA | |
| IL_7Q08_080 | 1/1/1894:1897, 1/1/2314:2315 | Major groove platform; stack outside cWW | geometric IL_5TBW_076 NA | |
| IL_7Q08_239 | 1/1/1894:1902, 1/1/2311:2315 | No text annotation | homologous IL_8C3A_484 NA | |
| IL_7Q08_081 | 1/1/1897:1902, 1/1/2311:2314 | No text annotation | homologous IL_8C3A_083 NA | |
| IL_7Q08_082 | 1/1/1914:1919, 1/1/1924:1930 | tSH-tSH-tHH-tHS | geometric IL_4V9F_063 IL_47346.2 | |
| IL_7Q08_083 | 1/1/1936:1938, 1/1/2084:2086 | Isolated non-canonical cWW pair | homologous IL_8C3A_085 NA | |
| IL_7Q08_084 | 1/1/1943:1944, 1/1/2076:2079 | No text annotation | homologous IL_8C3A_086 NA | |
| IL_7Q08_085 | 1/1/1948:1953, 1/1/2062:2072 | No text annotation | ||
| IL_7Q08_240 | 1/1/1948:1954, 1/1/2060:2072 | No text annotation | ||
| IL_7Q08_086 | 1/1/1953:1954, 1/1/2060:2062 | No text annotation | ||
| IL_7Q08_087 | 1/1/1954:1960, 1/1/2055:2060 | No text annotation | ||
| IL_7Q08_241 | 1/1/1954:1968, 1/1/2046:2060 | No text annotation | ||
| IL_7Q08_088 | 1/1/1960:1968, 1/1/2046:2055 | No text annotation | ||
| IL_7Q08_089 | 1/1/1969:1973, 1/1/2042:2045 | No text annotation | ||
| IL_7Q08_090 | 1/1/2106:2107, 1/1/2301:2303 | Single bulged A | homologous IL_8C3A_087 NA | |
| IL_7Q08_091 | 1/1/2134:2139, 1/1/2151:2158 | No text annotation | homologous IL_8C3A_088 NA | |
| IL_7Q08_092 | 1/1/2174:2177, 1/1/2223:2224 | No text annotation | homologous IL_8C3A_089 NA | |
| IL_7Q08_093 | 1/1/2178:2179, 1/1/2219:2222 | Multiple bulged bases | homologous IL_8C3A_090 NA | |
| IL_7Q08_094 | 1/1/2182:2184, 1/1/2215:2216 | Single stack bend | homologous IL_8C3A_091 NA | |
| IL_7Q08_242 | 1/1/2182:2188, 1/1/2213:2216 | No text annotation | ||
| IL_7Q08_095 | 1/1/2184:2188, 1/1/2213:2215 | No text annotation | homologous IL_8C3A_092 NA | |
| IL_7Q08_096 | 1/1/2189:2195, 1/1/2206:2212 | No text annotation | homologous IL_8C3A_093 NA | |
| IL_7Q08_097 | 1/1/2254:2255, 1/1/2285:2288 | Bulged stacked bases | geometric IL_5TBW_089 NA | |
| IL_7Q08_098 | 1/1/2255:2266, 1/1/2282:2285 | No text annotation | homologous IL_8C3A_095 NA | |
| IL_7Q08_099 | 1/1/2369:2372, 1/1/2958:2960 | No text annotation | homologous IL_8C3A_096 NA | |
| IL_7Q08_100 | 1/1/2374:2376, 1/1/2953:2956 | No text annotation | homologous IL_8C3A_097 NA | |
| IL_7Q08_101 | 1/1/2387:2389, 1/1/2783:2784 | Single bulged U | homologous IL_8C3A_098 NA | |
| IL_7Q08_102 | 1/1/2390:2391, 1/1/2779:2782 | Minor groove platform | homologous IL_8C3A_099 NA | |
| IL_7Q08_103 | 1/1/2401:2403, 1/1/2576:2579 | No text annotation | homologous IL_8C3A_100 NA | |
| IL_7Q08_104 | 1/1/2498:2504, 1/1/2556:2559 | No text annotation | homologous IL_8C3A_106 NA | |
| IL_7Q08_105 | 1/1/2586:2587, 1/1/2597:2599 | Single bulged A | homologous IL_8C3A_107 NA | |
| IL_7Q08_106 | 1/1/2638:2640, 1/1/2658:2662 | Isolated tHS basepair with bulges | geometric IL_5TBW_099 NA | |
| IL_7Q08_107 | 1/1/2690:2693, 1/1/2707:2710 | Tandem non-canonical cWW pairs | homologous IL_8C3A_109 NA | |
| IL_7Q08_108 | 1/1/2742:2745, 1/1/2759:2760 | Single stack bend | homologous IL_8C3A_110 NA | |
| IL_7Q08_109 | 1/1/2795:2796, 1/1/2837:2839 | Major groove platform | geometric IL_5TBW_102 NA | |
| IL_7Q08_243 | 1/1/2795:2798, 1/1/2835:2839 | No text annotation | homologous IL_8C3A_111 NA | |
| IL_7Q08_110 | 1/1/2796:2798, 1/1/2835:2837 | Isolated non-canonical cWW pair | geometric IL_5TBW_103 NA | |
| IL_7Q08_111 | 1/1/2798:2800, 1/1/2834:2835 | Major groove platform | homologous IL_8C3A_112 NA | |
| IL_7Q08_112 | 1/1/2800:2802, 1/1/2830:2834 | Major groove minor groove platform with extra cWW | geometric IL_4V9F_084 IL_51387.3 | |
| IL_7Q08_113 | 1/1/2807:2811, 1/1/2821:2825 | No text annotation | homologous IL_8C3A_114 NA | |
| IL_7Q08_114 | 1/1/2848:2849, 1/1/2921:2923 | Major groove platform | homologous IL_8C3A_115 NA | |
| IL_7Q08_115 | 1/1/2851:2853, 1/1/2915:2919 | No text annotation | homologous IL_8C3A_116 NA | |
| IL_7Q08_116 | 1/1/2853:2854, 1/1/2912:2915 | Multiple bulged bases | geometric IL_5TBW_109 NA | |
| IL_7Q08_117 | 1/1/2861:2863, 1/1/2884:2886 | Isolated non-canonical cWW pair | geometric IL_5TBW_110 NA | |
| IL_7Q08_244 | 1/1/2861:2864, 1/1/2881:2886 | No text annotation | homologous IL_8P9A_338 IL_07469.2 | |
| IL_7Q08_118 | 1/1/2863:2864, 1/1/2881:2884 | Major groove platform with intercalation | homologous IL_8C3A_119 NA | |
| IL_7Q08_119 | 1/1/2890:2892, 1/1/2898:2900 | Isolated non-canonical cWW pair | homologous IL_8C3A_120 NA | |
| IL_7Q08_120 | 1/1/2932:2933, 1/1/2942:2944 | Single bulged A | homologous IL_8C3A_122 NA | |
| IL_7Q08_121 | 1/1/2976:2979, 1/1/3111:3116 | Double sheared | homologous IL_8C3A_123 NA | |
| IL_7Q08_122 | 1/1/2984:2986, 1/1/3012:3014 | Isolated non-canonical cWW pair | homologous IL_8C3A_124 NA | |
| IL_7Q08_123 | 1/1/2990:2997, 1/1/3002:3008 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8C3A_125 NA | |
| IL_7Q08_124 | 1/1/3019:3023, 1/1/3063:3066 | Major groove minor groove platform with tHH | homologous IL_8C3A_126 NA | |
| IL_7Q08_125 | 1/1/3026:3031, 1/1/3056:3060 | UAA/GAN related | homologous IL_8C3A_127 NA | |
| IL_7Q08_126 | 1/1/3035:3036, 1/1/3049:3052 | No text annotation | homologous IL_8C3A_128 NA | |
| IL_7Q08_127 | 1/1/3075:3079, 1/1/3099:3103 | UAA/GAN | homologous IL_8C3A_129 NA | |
| IL_7Q08_128 | 1/1/3134:3136, 1/1/3249:3251 | Isolated non-canonical cWW pair | homologous IL_8C3A_130 NA | |
| IL_7Q08_129 | 1/1/3147:3149, 1/1/3175:3176 | Single bulged A | geometric IL_5TBW_123 NA | |
| IL_7Q08_130 | 1/1/3149:3158, 1/1/3169:3175 | No text annotation | homologous IL_8C3A_132 NA | |
| IL_7Q08_131 | 1/1/3190:3194, 1/1/3223:3225 | No text annotation | homologous IL_8C3A_133 NA | |
| IL_7Q08_132 | 1/1/3200:3203, 1/1/3214:3217 | Tandem non-canonical cWW pairs | homologous IL_8C3A_134 NA | |
| IL_7Q08_133 | 1/1/3265:3268, 1/1/3276:3279 | Tandem non-canonical cWW pairs | homologous IL_8C3A_135 NA | |
| IL_7Q08_134 | 1/1/3283:3285, 1/1/3352:3353 | Single bulged U | geometric IL_5J7L_298 IL_89505.4 | |
| IL_7Q08_135 | 1/1/3289:3290, 1/1/3346:3348 | Single bulged U | homologous IL_8C3A_137 NA | |
| IL_7Q08_136 | 1/1/3293:3295, 1/1/3338:3343 | No text annotation | homologous IL_8C3A_138 NA | |
| IL_7Q08_137 | 1/1/3297:3302, 1/1/3332:3336 | No text annotation | homologous IL_8C3A_139 NA | |
| IL_7Q08_138 | 1/1/3305:3307, 1/1/3328:3329 | Single bulged U | geometric IL_3WBM_001 IL_89505.4 | |
| IL_7Q08_139 | 1/1/3307:3310, 1/1/3325:3328 | Double sheared; A in syn | homologous IL_8C3A_141 NA | |
| IL_7Q08_140 | 1/1/3314:3315, 1/1/3318:3321 | Multiple bulged bases | geometric IL_7V9E_001 NA | |
| IL_7Q08_141 | 1/3/15:16, 1/3/63:65 | Single bulged A | geometric IL_5TBW_372 NA | |
| IL_7Q08_142 | 1/3/21:27, 1/3/53:58 | Minor groove platform related | geometric IL_5TBW_373 NA | |
| IL_7Q08_143 | 1/3/28:29, 1/3/49:52 | Minor groove platform | geometric IL_5TBW_374 NA | |
| IL_7Q08_144 | 1/3/29:30, 1/3/47:49 | Single stack bend | geometric IL_5TBW_375 NA | |
| IL_7Q08_145 | 1/3/32:36, 1/3/41:45 | Symmetric double minor groove platform | homologous IL_7RQB_114 NA | |
| IL_7Q08_146 | 1/3/72:80, 1/3/100:106 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5TBW_377 NA | |
| IL_7Q08_147 | 1/3/84:87, 1/3/94:96 | Isolated non-canonical cWW pair | geometric IL_5TBW_378 NA | |
| IL_7Q08_148 | 1/4/44:64, 1/4/96:100 | No text annotation | geometric IL_5TBW_144 NA | |
| IL_7Q08_149 | 1/4/64:66, 1/4/93:96 | Isolated non-canonical cWW pair | geometric IL_5TBW_145 NA | |
| IL_7Q08_150 | 1/4/67:68, 1/4/90:92 | Single bulged C | geometric IL_5TBW_002 NA | |
| IL_7Q08_151 | 1/A/24:26, 1/A/598:599 | Single bulged C | homologous IL_8C3A_392 NA | |
| IL_7Q08_152 | 1/A/35:37, 1/A/469:471 | Isolated non-canonical cWW pair | geometric IL_4V88_385 NA | |
| IL_7Q08_153 | 1/A/37:41, 1/A/464:469 | Triple sheared related | geometric IL_4V88_386 NA | |
| IL_7Q08_154 | 1/A/42:48, 1/A/429:431 | No text annotation | geometric IL_4V88_387 NA | |
| IL_7Q08_155 | 1/A/50:52, 1/A/426:427 | Minor groove platform | geometric IL_4V88_388 NA | |
| IL_7Q08_156 | 1/A/58:63, 1/A/87:89 | No text annotation | geometric IL_4V88_389 NA | |
| IL_7Q08_157 | 1/A/64:69, 1/A/82:86 | No text annotation | geometric IL_4V88_390 NA | |
| IL_7Q08_158 | 1/A/109:112, 1/A/300:303 | Tandem non-canonical cWW pairs | geometric IL_4V88_391 NA | |
| IL_7Q08_159 | 1/A/113:116, 1/A/298:299 | Multiple bulged bases | geometric IL_4V88_392 NA | |
| IL_7Q08_160 | 1/A/117:122, 1/A/293:297 | No text annotation | geometric IL_4V88_393 NA | |
| IL_7Q08_161 | 1/A/141:147, 1/A/163:170 | tWH-tWH-tHW-tHW | geometric IL_4V88_394 NA | |
| IL_7Q08_162 | 1/A/147:150, 1/A/160:163 | Tandem non-canonical cWW pairs | geometric IL_3WBM_002 IL_85033.2 | |
| IL_7Q08_163 | 1/A/184:187, 1/A/194:197 | Double sheared | geometric IL_1SAQ_002 NA | |
| IL_7Q08_164 | 1/A/202:204, 1/A/257:261 | Major groove platform with extra cWW | geometric IL_7RQB_022 NA | |
| IL_7Q08_165 | 1/A/204:206, 1/A/255:257 | Isolated non-canonical cWW pair | geometric IL_2O3V_004 IL_28037.2 | |
| IL_7Q08_167 | 1/A/263:266, 1/A/285:287 | Isolated non-canonical cWW pair | geometric IL_4ZC7_001 IL_87907.2 | |
| IL_7Q08_168 | 1/A/268:271, 1/A/281:283 | No text annotation | geometric IL_4V88_400 NA | |
| IL_7Q08_169 | 1/A/273:274, 1/A/277:279 | Single bulged U | homologous IL_8C3A_409 NA | |
| IL_7Q08_170 | 1/A/309:314, 1/A/346:353 | Kink-turn with non-sequential stacking | geometric IL_4V88_402 NA | |
| IL_7Q08_171 | 1/A/316:321, 1/A/343:344 | No text annotation | geometric IL_5Y58_001 IL_59877.1 | |
| IL_7Q08_172 | 1/A/361:363, 1/A/374:379 | No text annotation | geometric IL_4V88_404 NA | |
| IL_7Q08_173 | 1/A/387:389, 1/A/404:406 | Isolated cWH basepair | geometric IL_4V88_405 NA | |
| IL_7Q08_174 | 1/A/409:411, 1/A/418:420 | Isolated near basepair | geometric IL_3NJ7_003 IL_42997.3 | |
| IL_7Q08_175 | 1/A/437:439, 1/A/461:462 | Single bulged U | geometric IL_4LFB_014 IL_89505.4 | |
| IL_7Q08_176 | 1/A/441:445, 1/A/458:459 | C-loop | geometric IL_5J7L_018 IL_03109.3 | |
| IL_7Q08_177 | 1/A/445:446, 1/A/456:458 | Single bulged G | geometric IL_5J7L_019 IL_00225.14 | |
| IL_7Q08_253 | 1/A/480:483, 1/A/502:504 | No text annotation | ||
| IL_7Q08_254 | 1/A/515:516, 1/A/531:533 | Minor groove platform | homologous IL_8CRE_419 IL_51454.3 | |
| IL_7Q08_180 | 1/A/516:518, 1/A/530:531 | Minor groove platform | geometric IL_4V88_388 NA | |
| IL_7Q08_181 | 1/A/548:555, 1/A/585:586 | SSU/LSU pseudoknot | geometric IL_4V88_413 NA | |
| IL_7Q08_182 | 1/A/555:557, 1/A/584:585 | Single bulged U | geometric IL_4V88_414 NA | |
| IL_7Q08_183 | 1/A/560:566, 1/A/573:581 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_7Q08_184 | 1/A/614:620, 1/A/1089:1090 | No text annotation | geometric IL_4V88_416 NA | |
| IL_7Q08_185 | 1/A/622:624, 1/A/958:960 | Isolated non-canonical cWW pair | geometric IL_1Z7F_002 NA | |
| IL_7Q08_186 | 1/A/625:629, 1/A/953:957 | tSH-tHW-tHS | geometric IL_4V88_418 NA | |
| IL_7Q08_255 | 1/A/731:732, 1/A/786:789 | No text annotation | homologous IL_8CRE_428 IL_68140.4 | |
| IL_7Q08_188 | 1/A/733:735, 1/A/783:785 | Isolated non-canonical cWW pair | geometric IL_7A0S_078 IL_28037.2 | |
| IL_7Q08_189 | 1/A/736:738, 1/A/778:782 | Minor groove platform with extra cWW | geometric IL_5J7L_006 IL_90351.1 | |
| IL_7Q08_245 | 1/A/736:744, 1/A/775:782 | No text annotation | homologous IL_8C3A_503 NA | |
| IL_7Q08_190 | 1/A/738:744, 1/A/775:778 | No text annotation | homologous IL_8C3A_433 NA | |
| IL_7Q08_191 | 1/A/803:806, 1/A/836:837 | Multiple bulged bases | geometric IL_7V9E_001 NA | |
| IL_7Q08_192 | 1/A/853:855, 1/A/942:945 | Single bulged G, near cWW | geometric IL_6CZR_128 NA | |
| IL_7Q08_193 | 1/A/856:859, 1/A/938:941 | Tandem non-canonical cWW pairs | geometric IL_4V88_430 NA | |
| IL_7Q08_194 | 1/A/859:863, 1/A/935:938 | Tandem non-canonical cWW pairs | geometric IL_4V88_431 NA | |
| IL_7Q08_195 | 1/A/870:873, 1/A/909:912 | Tandem non-canonical cWW pairs | geometric IL_4V88_432 NA | |
| IL_7Q08_196 | 1/A/878:880, 1/A/902:904 | Isolated non-canonical cWW pair | geometric IL_3GM7_005 IL_87907.2 | |
| IL_7Q08_247 | 1/A/878:884, 1/A/895:904 | Kink-turn related | homologous IL_8C3A_440 NA | |
| IL_7Q08_197 | 1/A/880:884, 1/A/895:902 | Kink-turn | geometric IL_4V88_434 NA | |
| IL_7Q08_198 | 1/A/970:975, 1/A/999:1001 | Other IL | geometric IL_4V88_435 NA | |
| IL_7Q08_199 | 1/A/975:979, 1/A/995:999 | tSH-tHW-tHS | geometric IL_4LFB_033 IL_17136.7 | |
| IL_7Q08_200 | 1/A/1019:1021, 1/A/1080:1086 | No text annotation | geometric IL_4V88_437 NA | |
| IL_7Q08_201 | 1/A/1026:1029, 1/A/1059:1062 | Tandem non-canonical cWW pairs | geometric IL_4V88_438 NA | |
| IL_7Q08_202 | 1/A/1036:1040, 1/A/1049:1052 | Tandem non-canonical cWW pairs | geometric IL_5EW4_002 IL_85033.2 | |
| IL_7Q08_203 | 1/A/1096:1103, 1/A/1114:1119 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | geometric IL_4V88_440 NA | |
| IL_7Q08_204 | 1/A/1131:1132, 1/A/1617:1619 | Single bulged A | geometric IL_5J7L_039 IL_31462.7 | |
| IL_7Q08_205 | 1/A/1134:1136, 1/A/1614:1615 | Single bulged G | geometric IL_4V88_442 NA | |
| IL_7Q08_206 | 1/A/1142:1145, 1/A/1604:1608 | C-loop | geometric IL_4V88_443 NA | |
| IL_7Q08_207 | 1/A/1158:1160, 1/A/1450:1452 | Isolated non-canonical cWW pair | geometric IL_4V9F_017 IL_87907.2 | |
| IL_7Q08_208 | 1/A/1163:1164, 1/A/1445:1447 | Minor groove platform | geometric IL_4V88_445 NA | |
| IL_7Q08_256 | 1/A/1198:1200, 1/A/1434:1436 | Isolated non-canonical cWW pair | homologous IL_8CRE_448 IL_87907.2 | |
| IL_7Q08_248 | 1/A/1209:1221, 1/A/1234:1244 | No text annotation | ||
| IL_7Q08_210 | 1/A/1253:1255, 1/A/1426:1427 | Single bulged U | geometric IL_4V88_449 NA | |
| IL_7Q08_211 | 1/A/1257:1261, 1/A/1422:1424 | Isolated cWS basepair | geometric IL_4V88_450 NA | |
| IL_7Q08_249 | 1/A/1257:1264, 1/A/1415:1424 | No text annotation | homologous IL_8C3A_505 NA | |
| IL_7Q08_212 | 1/A/1261:1264, 1/A/1415:1422 | Minor groove platform related | geometric IL_5J7L_010 IL_64231.5 | |
| IL_7Q08_213 | 1/A/1265:1266, 1/A/1412:1414 | Single bulged A | geometric IL_4V88_452 NA | |
| IL_7Q08_214 | 1/A/1275:1277, 1/A/1308:1310 | Isolated non-canonical cWW pair | geometric IL_5UNE_003 IL_87907.2 | |
| IL_7Q08_215 | 1/A/1291:1293, 1/A/1302:1303 | Minor groove platform | geometric IL_4V88_454 NA | |
| IL_7Q08_216 | 1/A/1324:1329, 1/A/1367:1371 | Other IL | geometric IL_4WF9_084 NA | |
| IL_7Q08_217 | 1/A/1330:1333, 1/A/1363:1366 | Minor groove platform | geometric IL_4V88_456 NA | |
| IL_7Q08_218 | 1/A/1336:1338, 1/A/1355:1360 | Isolated non-canonical cWW pair | geometric IL_4P3T_005 NA | |
| IL_7Q08_219 | 1/A/1375:1377, 1/A/1393:1398 | Major groove platform; stack outside cWW | geometric IL_4V88_458 NA | |
| IL_7Q08_220 | 1/A/1466:1473, 1/A/1506:1514 | No text annotation | geometric IL_4V88_459 NA | |
| IL_7Q08_221 | 1/A/1474:1481, 1/A/1500:1505 | 180 degree turn | homologous IL_8C3A_467 NA | |
| IL_7Q08_222 | 1/A/1483:1485, 1/A/1496:1498 | Isolated non-canonical cWW pair | geometric IL_5TBW_016 NA | |
| IL_7Q08_251 | 1/A/1527:1532, 1/A/1553:1558 | No text annotation | homologous IL_8C3A_507 NA | |
| IL_7Q08_224 | 1/A/1623:1625, 1/A/1751:1754 | No text annotation | geometric IL_4V88_463 NA | |
| IL_7Q08_225 | 1/A/1625:1628, 1/A/1747:1751 | No text annotation | geometric IL_4V88_464 NA | |
| IL_7Q08_226 | 1/A/1629:1631, 1/A/1744:1746 | Isolated non-canonical cWW pair | geometric IL_4V88_465 NA | |
| IL_7Q08_227 | 1/A/1631:1634, 1/A/1740:1744 | Tandem non-canonical cWW pairs | geometric IL_5J7L_033 IL_85033.2 | |
| IL_7Q08_228 | 1/A/1637:1639, 1/A/1735:1737 | Isolated non-canonical cWW pair | geometric IL_5ED1_002 IL_87907.2 | |
| IL_7Q08_229 | 1/A/1640:1643, 1/A/1731:1734 | Double sheared | geometric IL_4V88_468 NA | |
| IL_7Q08_230 | 1/A/1643:1645, 1/A/1730:1731 | Single bulged U | geometric IL_4V88_469 NA | |
| IL_7Q08_231 | 1/A/1652:1654, 1/A/1721:1723 | Isolated non-canonical cWW pair | geometric IL_4V88_470 NA | |
| IL_7Q08_232 | 1/A/1656:1659, 1/A/1716:1719 | Double sheared | geometric IL_4V88_471 NA | |
| IL_7Q08_233 | 1/A/1662:1665, 1/A/1710:1713 | Tandem non-canonical cWW pairs | geometric IL_3TZR_003 IL_77658.1 | |
| IL_7Q08_234 | 1/A/1665:1669, 1/A/1706:1710 | Triple sheared | geometric IL_4V88_474 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7Q08_235 | No text annotation | ||
| IL_7Q08_045 | Isolated cWH basepair | ||
| IL_7Q08_049 | No text annotation | ||
| IL_7Q08_236 | No text annotation | ||
| IL_7Q08_065 | No text annotation | ||
| IL_7Q08_069 | No text annotation | ||
| IL_7Q08_166 | No text annotation | ||
| IL_7Q08_178 | No text annotation | ||
| IL_7Q08_179 | Minor groove platform with extra cWW | ||
| IL_7Q08_187 | Major groove minor groove platform with extra cWW | ||
| IL_7Q08_246 | No text annotation | ||
| IL_7Q08_209 | Tandem non-canonical cWW pairs | ||
| IL_7Q08_250 | No text annotation | ||
| IL_7Q08_223 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_7Q08_001 | 1/1/112:122, 1/1/148:157, 1/1/263:267 | No text annotation | homologous J3_8C3A_001 NA | |
| J3_7Q08_033 | 1/1/112:123, 1/1/143:157, 1/1/263:267 | No text annotation | ||
| J3_7Q08_034 | 1/1/184:188, 1/1/204:213, 1/1/225:230 | No text annotation | homologous J3_8C3A_046 NA | |
| J3_7Q08_035 | 1/1/340:356, 1/1/363:368, 1/4/21:24 | No text annotation | homologous J3_8P9A_045 J3_30040.2 | |
| J3_7Q08_002 | 1/1/369:376, 1/1/403:404, 1/4/19:20 | No text annotation | geometric J3_8C3A_048 NA | |
| J3_7Q08_036 | 1/1/369:379, 1/1/390:404, 1/4/19:20 | No text annotation | homologous J3_8C3A_049 NA | |
| J3_7Q08_003 | 1/1/436:439, 1/1/488:490, 1/1/616:621 | No text annotation | homologous J3_8C3A_002 NA | |
| J3_7Q08_004 | 1/1/497:498, 1/1/586:595, 1/1/604:609 | No text annotation | homologous J3_8C3A_050 NA | |
| J3_7Q08_005 | 1/1/810:816, 1/1/901:903, 1/1/919:922 | No text annotation | homologous J3_8C3A_003 NA | |
| J3_7Q08_006 | 1/1/825:827, 1/1/859:863, 1/1/888:891 | No text annotation | homologous J3_8C3A_004 NA | |
| J3_7Q08_007 | 1/1/982:983, 1/1/1058:1062, 1/1/1088:1094 | No text annotation | homologous J3_8C3A_051 NA | |
| J3_7Q08_008 | 1/1/1225:1228, 1/1/1252:1258, 1/1/1273:1276 | No text annotation | ||
| J3_7Q08_009 | 1/1/1475:1481, 1/1/1853:1855, 1/1/1867:1870 | No text annotation | homologous J3_8C3A_006 NA | |
| J3_7Q08_010 | 1/1/1484:1487, 1/1/1833:1839, 1/1/1848:1850 | No text annotation | homologous J3_8C3A_007 NA | |
| J3_7Q08_011 | 1/1/1522:1527, 1/1/1587:1591, 1/1/1608:1609 | No text annotation | homologous J3_8P9A_055 J3_31965.2 | |
| J3_7Q08_037 | 1/1/1533:1538, 1/1/1547:1556, 1/1/1574:1580 | No text annotation | homologous J3_8C3A_053 NA | |
| J3_7Q08_012 | 1/1/1627:1628, 1/1/1637:1641, 1/1/1806:1807 | No text annotation | homologous J3_8C3A_054 NA | |
| J3_7Q08_038 | 1/1/1650:1654, 1/1/1787:1788, 1/1/1792:1797 | No text annotation | homologous J3_8P9A_058 J3_12393.2 | |
| J3_7Q08_013 | 1/1/2410:2413, 1/1/2490:2495, 1/1/2562:2569 | No text annotation | homologous J3_8C3A_008 NA | |
| J3_7Q08_014 | 1/1/2507:2510, 1/1/2525:2540, 1/1/2550:2553 | No text annotation | homologous J3_8C3A_009 NA | |
| J3_7Q08_039 | 1/1/2623:2625, 1/1/2726:2737, 1/1/2765:2770 | No text annotation | homologous J3_8C3A_056 NA | |
| J3_7Q08_016 | 1/1/2636:2638, 1/1/2662:2664, 1/1/2673:2678 | No text annotation | homologous J3_8C3A_010 NA | |
| J3_7Q08_017 | 1/1/2858:2861, 1/1/2886:2888, 1/1/2902:2908 | No text annotation | homologous J3_8C3A_011 NA | |
| J3_7Q08_040 | 1/1/3138:3146, 1/1/3177:3185, 1/1/3230:3247 | No text annotation | ||
| J3_7Q08_018 | 1/1/3263:3264, 1/1/3280:3283, 1/1/3353:3355 | No text annotation | homologous J3_8C3A_058 NA | |
| J3_7Q08_019 | 1/3/9:14, 1/3/66:67, 1/3/111:112 | No text annotation | homologous J3_7RQB_015 NA | |
| J3_7Q08_041 | 1/4/44:45, 1/4/58:64, 1/4/96:100 | No text annotation | homologous J3_8P9A_067 J3_35667.2 | |
| J3_7Q08_020 | 1/A/41:42, 1/A/431:437, 1/A/462:464 | No text annotation | homologous J3_8P9A_068 J3_67856.4 | |
| J3_7Q08_021 | 1/A/631:633, 1/A/846:851, 1/A/947:951 | No text annotation | homologous J3_8C3A_034 NA | |
| J3_7Q08_022 | 1/A/745:748, 1/A/758:760, 1/A/769:774 | No text annotation | homologous J3_8C3A_035 NA | |
| J3_7Q08_023 | 1/A/866:870, 1/A/912:921, 1/A/928:932 | No text annotation | homologous J3_8C3A_036 NA | |
| J3_7Q08_024 | 1/A/1022:1024, 1/A/1064:1068, 1/A/1075:1079 | No text annotation | homologous J3_8C3A_037 NA | |
| J3_7Q08_025 | 1/A/1146:1149, 1/A/1568:1574, 1/A/1596:1603 | No text annotation | homologous J3_8C3A_038 NA | |
| J3_7Q08_026 | 1/A/1153:1156, 1/A/1454:1456, 1/A/1561:1564 | No text annotation | homologous J3_8C3A_039 NA | |
| J3_7Q08_027 | 1/A/1165:1172, 1/A/1183:1194, 1/A/1440:1444 | No text annotation | homologous J3_8C3A_040 NA | |
| J3_7Q08_028 | 1/A/1200:1205, 1/A/1248:1252, 1/A/1428:1434 | No text annotation | homologous J3_8C3A_041 NA | |
| J3_7Q08_029 | 1/A/1267:1273, 1/A/1312:1317, 1/A/1405:1411 | No text annotation | homologous J3_8C3A_042 NA | |
| J3_7Q08_030 | 1/A/1278:1279, 1/A/1288:1291, 1/A/1303:1307 | No text annotation | homologous J3_8C3A_085 NA | |
| J3_7Q08_031 | 1/A/1321:1323, 1/A/1372:1375, 1/A/1398:1401 | No text annotation | homologous J3_8C3A_043 NA | |
| J3_7Q08_042 | 1/A/1321:1323, 1/A/1372:1377, 1/A/1393:1401 | No text annotation | homologous J3_8C3A_086 NA | |
| J3_7Q08_032 | 1/A/1456:1460, 1/A/1520:1527, 1/A/1558:1561 | No text annotation | homologous J3_8C3A_044 NA | |
| J4_7Q08_001 | 1/1/111:112, 1/1/267:272, 1/1/293:299, 1/1/316:319 | No text annotation | homologous J4_8C3A_001 NA | |
| J4_7Q08_002 | 1/1/184:188, 1/1/204:207, 1/1/211:213, 1/1/225:230 | No text annotation | homologous J4_8C3A_002 NA | |
| J4_7Q08_003 | 1/1/1447:1453, 1/1/1471:1472, 1/1/1873:1876, 1/1/2330:2331 | No text annotation | homologous J4_8C3A_003 NA | |
| J4_7Q08_004 | 1/1/1488:1492, 1/1/1516:1521, 1/1/1610:1611, 1/1/1825:1832 | No text annotation | homologous J4_8C3A_004 NA | |
| J4_7Q08_005 | 1/1/1670:1671, 1/1/1689:1690, 1/1/1748:1749, 1/1/1768:1769 | No text annotation | homologous J4_8C3A_005 NA | |
| J4_7Q08_006 | 1/1/2108:2112, 1/1/2124:2128, 1/1/2164:2168, 1/1/2295:2300 | No text annotation | homologous J4_8C3A_006 NA | |
| J4_7Q08_007 | 1/1/2170:2172, 1/1/2226:2227, 1/1/2245:2254, 1/1/2288:2293 | No text annotation | homologous J4_8C3A_007 NA | |
| J4_7Q08_008 | 1/1/2626:2630, 1/1/2684:2688, 1/1/2712:2714, 1/1/2723:2725 | No text annotation | homologous J4_8C3A_008 NA | |
| J4_7Q08_009 | 1/1/2982:2984, 1/1/3014:3015, 1/1/3070:3072, 1/1/3106:3108 | No text annotation | homologous J4_8C3A_009 NA | |
| J4_7Q08_010 | 1/A/99:107, 1/A/305:307, 1/A/355:359, 1/A/381:382 | No text annotation | homologous J4_8C3A_021 NA | |
| J4_7Q08_011 | 1/A/620:622, 1/A/960:965, 1/A/1006:1017, 1/A/1088:1089 | No text annotation | homologous J4_8P9A_022 J4_61885.6 | |
| J5_7Q08_001 | 1/1/19:21, 1/4/35:42, 1/4/102:107, 1/4/115:116, 1/4/137:139 | No text annotation | homologous J5_8C3A_001 NA | |
| J5_7Q08_002 | 1/1/656:661, 1/1/795:798, 1/1/937:940, 1/1/1371:1372, 1/1/1427:1433 | No text annotation | homologous J5_8C3A_002 NA | |
| J5_7Q08_003 | 1/1/673:676, 1/1/700:704, 1/1/711:719, 1/1/745:747, 1/1/778:783 | No text annotation | homologous J5_8P9A_012 J5_23272.1 | |
| J5_7Q08_004 | 1/1/1902:1910, 1/1/1934:1935, 1/1/2087:2088, 1/1/2092:2100, 1/1/2309:2311 | No text annotation | homologous J5_8C3A_004 NA | |
| J5_7Q08_005 | 1/1/2377:2384, 1/1/2787:2795, 1/1/2839:2848, 1/1/2923:2929, 1/1/2947:2952 | No text annotation | ||
| J5_7Q08_006 | 1/1/2394:2397, 1/1/2583:2586, 1/1/2599:2600, 1/1/2622:2623, 1/1/2770:2776 | No text annotation | homologous J5_8P9A_015 J5_08912.1 | |
| J5_7Q08_007 | 1/A/31:35, 1/A/471:477, 1/A/507:514, 1/A/534:544, 1/A/590:593 | No text annotation | ||
| J5_7Q08_008 | 1/A/54:57, 1/A/90:97, 1/A/384:386, 1/A/407:409, 1/A/420:424 | No text annotation | homologous J5_8C3A_020 NA | |
| J5_7Q08_009 | 1/A/634:639, 1/A/691:696, 1/A/725:729, 1/A/791:801, 1/A/839:845 | No text annotation | ||
| J6_7Q08_001 | 1/1/21:26, 1/1/57:67, 1/1/74:78, 1/1/105:109, 1/1/321:331, 1/4/32:35 | No text annotation | ||
| J6_7Q08_002 | 1/1/2394:2397, 1/1/2583:2586, 1/1/2599:2600, 1/1/2622:2625, 1/1/2726:2737, 1/1/2765:2776 | No text annotation | ||
| J7_7Q08_001 | 1/1/945:950, 1/1/963:964, 1/1/1110:1113, 1/1/1137:1142, 1/1/1153:1157, 1/1/1334:1335, 1/1/1361:1366 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_7Q08_015 | No text annotation |
Coloring options: