HL_7Q08_034

3D structure

PDB id

7Q08 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with cycloheximide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.56 Å

Loop

Sequence

GAAGCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7Q08_034 not in the Motif Atlas

Homologous match to HL_8C3A_033

Geometric discrepancy: 0.0625

The information below is about HL_8C3A_033

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7Q08|1|1|G|1540
7Q08|1|1|A|1541
7Q08|1|1|A|1542
7Q08|1|1|G|1543
7Q08|1|1|C|1544
7Q08|1|1|U|1545

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain AK

Ribosomal protein L37

Chain v

Ribosomal protein L15