HL_7Q08_049

3D structure

PDB id

7Q08 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with cycloheximide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.56 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7Q08_049 not in the Motif Atlas

Homologous match to HL_8C3A_048

Geometric discrepancy: 0.101

The information below is about HL_8C3A_048

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7Q08|1|1|A|2198
7Q08|1|1|G|2199
7Q08|1|1|A|2200
7Q08|1|1|A|2201
7Q08|1|1|A|2202
7Q08|1|1|U|2203

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain AJ

60S ribosomal protein L36

Chain AP

Ribosomal 60S subunit protein L42A