HL_7Q08_072

3D structure

PDB id

7Q08 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with cycloheximide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.56 Å

Loop

Sequence

GCAUACGAC

Length

9 nucleotides

Bulged bases

7Q08|1|1|C|3269

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7Q08_072 not in the Motif Atlas

Geometric match to HL_5TBW_070

Geometric discrepancy: 0.1137

The information below is about HL_5TBW_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.4

Basepair signature

cWW-cSW-F-F-F-cWW

Number of instances in this motif group

9

Unit IDs

7Q08|1|1|G|3268
7Q08|1|1|C|3269
7Q08|1|1|A|3270
7Q08|1|1|U|3271
7Q08|1|1|A|3272
7Q08|1|1|C|3273
7Q08|1|1|G|3274
7Q08|1|1|A|3275
7Q08|1|1|C|3276

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain k

Ribosomal 60S subunit protein L3

Chain x

Ribosomal 60S subunit protein L17B