HL_7Q08_088

3D structure

PDB id

7Q08 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with cycloheximide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.56 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

7Q08|1|A|A|414

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7Q08_088 not in the Motif Atlas

Geometric match to HL_2HW8_001

Geometric discrepancy: 0.113

The information below is about HL_2HW8_001

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

7Q08|1|A|C|412
7Q08|1|A|C|413
7Q08|1|A|A|414
7Q08|1|A|A|415
7Q08|1|A|G|416
7Q08|1|A|G|417

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain 6

Ribosomal 60S subunit protein L23B

Chain H

40S ribosomal protein S6