HL_7Q08_090

3D structure

PDB id

7Q08 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with cycloheximide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.56 Å

Loop

Sequence

AAUGUAAAUACCU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7Q08_090 not in the Motif Atlas

Geometric match to HL_4V88_199

Geometric discrepancy: 0.1437

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

7Q08|1|A|A|518
7Q08|1|A|A|519
7Q08|1|A|U|520
7Q08|1|A|G|521
7Q08|1|A|U|522
7Q08|1|A|A|523
7Q08|1|A|A|524
7Q08|1|A|A|525
7Q08|1|A|U|526
7Q08|1|A|A|527
7Q08|1|A|C|528
7Q08|1|A|C|529
7Q08|1|A|U|530

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain F

40S ribosomal protein S4

Chain K

Ribosomal 40S subunit protein S9B

Chain Z

40S ribosomal protein S24