HL_7Q08_102

3D structure

PDB id

7Q08 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with cycloheximide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.56 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7Q08_102 not in the Motif Atlas

Geometric match to HL_4LFB_020

Geometric discrepancy: 0.0767

The information below is about HL_4LFB_020

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

7Q08|1|A|C|1106
7Q08|1|A|G|1107
7Q08|1|A|C|1108
7Q08|1|A|A|1109
7Q08|1|A|A|1110
7Q08|1|A|G|1111

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain AO

60S ribosomal protein eL41

Chain AQ

Ribosomal 60S subunit protein L43A