HL_7Q0F_024

3D structure

PDB id

7Q0F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with phyllanthoside

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

GUUGAAAUGAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7Q0F_024 not in the Motif Atlas

Homologous match to HL_8C3A_023

Geometric discrepancy: 0.4446

The information below is about HL_8C3A_023

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop

Motif group

HL_06059.1

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

51

Unit IDs

7Q0F|1|1|G|1017
7Q0F|1|1|U|1018
7Q0F|1|1|U|1019
7Q0F|1|1|G|1020
7Q0F|1|1|A|1021
7Q0F|1|1|A|1022
7Q0F|1|1|A|1023
7Q0F|1|1|U|1024
7Q0F|1|1|G|1025
7Q0F|1|1|A|1026
7Q0F|1|1|C|1027

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain Q

Ribosomal 40S subunit protein S15

Chain i

HABP4_PAI-RBP1 domain-containing protein

Chain s

Ribosomal 60S subunit protein L11B