HL_8C3A_023

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUUGAAAUGAC

Length

11 nucleotides

Bulged bases (A, C, G, U)

1019U

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_04355.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

1

Unit IDs

8C3A|1|1|G|1017
8C3A|1|1|U|1018
8C3A|1|1|U|1019
8C3A|1|1|G|1020
8C3A|1|1|A|1021
8C3A|1|1|A|1022
8C3A|1|1|A|1023
8C3A|1|1|U|1024
8C3A|1|1|G|1025
8C3A|1|1|A|1026
8C3A|1|1|C|1027

Current chains

Chain 1

25S

Nearby chains

Chain R

40S ribosomal protein S15

Chain i

60S ribosomal protein CAALFM_C304810CA