HL_7Q0P_007

3D structure

PDB id

7Q0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Candida albicans 80S ribosome in complex with anisomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.77 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

7Q0P|1|1|G|217, 7Q0P|1|1|A|218, 7Q0P|1|1|G|219

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7Q0P_007 not in the Motif Atlas

Homologous match to HL_8C3A_007

Geometric discrepancy: 0.0456

The information below is about HL_8C3A_007

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.12

Basepair signature

cWW-cWW-F-tWH

Number of instances in this motif group

16

Unit IDs

7Q0P|1|1|G|215
7Q0P|1|1|U|216
7Q0P|1|1|G|217
7Q0P|1|1|A|218
7Q0P|1|1|G|219
7Q0P|1|1|A|220
7Q0P|1|1|A|221
7Q0P|1|1|U|222
7Q0P|1|1|C|223

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 4

5.8S ribosomal RNA; 5.8S rRNA

Chain 9

Ribosomal 60S subunit protein L26B

Chain l

Ribosomal 60S subunit protein L4B