HL_7Q4K_006

3D structure

PDB id

7Q4K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin-stalled Escherichia coli 70S ribosome with streptococcal MsrDL nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

7Q4K|1|AA|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7Q4K_006 not in the Motif Atlas

Homologous match to HL_5J7L_006

Geometric discrepancy: 0.0869

The information below is about HL_5J7L_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

7Q4K|1|AA|G|259
7Q4K|1|AA|G|260
7Q4K|1|AA|U|261
7Q4K|1|AA|A|262
7Q4K|1|AA|A|263
7Q4K|1|AA|C|264
7Q4K|1|AA|G|265
7Q4K|1|AA|G|266
7Q4K|1|AA|C|267

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AQ

30S ribosomal protein S17

Chain AT

30S ribosomal protein S20