HL_7Q4K_044

3D structure

PDB id

7Q4K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin-stalled Escherichia coli 70S ribosome with streptococcal MsrDL nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

7Q4K|1|BA|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7Q4K_044 not in the Motif Atlas

Homologous match to HL_7A0S_014

Geometric discrepancy: 0.0942

The information below is about HL_7A0S_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

7Q4K|1|BA|G|410
7Q4K|1|BA|G|411
7Q4K|1|BA|A|412
7Q4K|1|BA|C|413
7Q4K|1|BA|C|414
7Q4K|1|BA|A|415
7Q4K|1|BA|U|416
7Q4K|1|BA|C|417

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BL

50S ribosomal protein L15