HL_7Q4K_076

3D structure

PDB id

7Q4K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin-stalled Escherichia coli 70S ribosome with streptococcal MsrDL nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUUAUUAAAAA

Length

11 nucleotides

Bulged bases

7Q4K|1|BA|A|1780, 7Q4K|1|BA|U|1781, 7Q4K|1|BA|U|1782, 7Q4K|1|BA|A|1786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7Q4K_076 not in the Motif Atlas

Homologous match to HL_5J7L_178

Geometric discrepancy: 0.0947

The information below is about HL_5J7L_178

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01962.2

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

7Q4K|1|BA|U|1777
7Q4K|1|BA|U|1778
7Q4K|1|BA|U|1779
7Q4K|1|BA|A|1780
7Q4K|1|BA|U|1781
7Q4K|1|BA|U|1782
7Q4K|1|BA|A|1783
7Q4K|1|BA|A|1784
7Q4K|1|BA|A|1785
7Q4K|1|BA|A|1786
7Q4K|1|BA|A|1787

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B2

50S ribosomal protein L34

Chain BC

50S ribosomal protein L2

Chain D1

MsrDL: FME-TYR-LEU-ILE-PHE-MET