HL_7Q4K_084

3D structure

PDB id

7Q4K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin-stalled Escherichia coli 70S ribosome with streptococcal MsrDL nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUG(OMG)GGCGG

Length

9 nucleotides

Bulged bases

7Q4K|1|BA|G|2250

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7Q4K_084 not in the Motif Atlas

Homologous match to HL_7A0S_052

Geometric discrepancy: 0.0948

The information below is about HL_7A0S_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

7Q4K|1|BA|C|2248
7Q4K|1|BA|U|2249
7Q4K|1|BA|G|2250
7Q4K|1|BA|OMG|2251
7Q4K|1|BA|G|2252
7Q4K|1|BA|G|2253
7Q4K|1|BA|C|2254
7Q4K|1|BA|G|2255
7Q4K|1|BA|G|2256

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BM

50S ribosomal protein L16

Chain BW

50S ribosomal protein L27

Chain D2

Transfer RNA; tRNA