HL_7Q4K_090

3D structure

PDB id

7Q4K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin-stalled Escherichia coli 70S ribosome with streptococcal MsrDL nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGAAUGGAAG

Length

10 nucleotides

Bulged bases

7Q4K|1|BA|A|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7Q4K_090 not in the Motif Atlas

Homologous match to HL_5J7L_192

Geometric discrepancy: 0.0884

The information below is about HL_5J7L_192

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53454.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

7Q4K|1|BA|U|2404
7Q4K|1|BA|G|2405
7Q4K|1|BA|A|2406
7Q4K|1|BA|A|2407
7Q4K|1|BA|U|2408
7Q4K|1|BA|G|2409
7Q4K|1|BA|G|2410
7Q4K|1|BA|A|2411
7Q4K|1|BA|A|2412
7Q4K|1|BA|G|2413

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BL

50S ribosomal protein L15