HL_7QCA_003

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

CAUAGUG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QCA_003 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.1514

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

7QCA|1|L50|C|104
7QCA|1|L50|A|105
7QCA|1|L50|U|106
7QCA|1|L50|A|107
7QCA|1|L50|G|108
7QCA|1|L50|U|109
7QCA|1|L50|G|110

Current chains

Chain L50

RNA 23S

Nearby chains

Chain LG0

60S ribosomal protein L8

Chain LHH

Ribosomal L29 protein

Chain LN0

Ribosomal protein L15