RNA 3D Hub //

7QCA Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_7QCA_0011/L50/47:56No text annotation
geometric
HL_7RQB_001
NA
HL_7QCA_0021/L50/72:77Externally structured
geometric
HL_5TBW_022
NA
HL_7QCA_0031/L50/104:110No text annotation
geometric
HL_5NFV_001
HL_69752.4
HL_7QCA_0041/L50/130:137No text annotation
homologous
HL_5TBW_001
NA
HL_7QCA_0051/L50/161:166No text annotation
homologous
HL_5TBW_002
NA
HL_7QCA_0061/L50/182:188No text annotation
homologous
HL_5TBW_003
NA
HL_7QCA_0071/L50/220:225No text annotation
HL_7QCA_0081/L50/258:268No text annotation
HL_7QCA_0091/L50/274:278No text annotation
homologous
HL_5TBW_006
NA
HL_7QCA_0101/L50/282:290T-loop with unstacked turn
homologous
HL_5TBW_007
NA
HL_7QCA_0111/L50/326:335T-loop related
homologous
HL_8P9A_120
HL_63894.3
HL_7QCA_0121/L50/350:359Pseudoknot geometry
homologous
HL_5TBW_009
NA
HL_7QCA_0131/L50/403:408GNRA
homologous
HL_8C3A_010
NA
HL_7QCA_0141/L50/443:449No text annotation
geometric
HL_5TBW_006
NA
HL_7QCA_0151/L50/458:467T-loop with 2 stacked bulged bases
homologous
HL_5TBW_014
NA
HL_7QCA_0161/L50/505:511No text annotation
geometric
HL_361D_002
NA
HL_7QCA_0171/L50/525:530GNRA
homologous
HL_8C3A_016
NA
HL_7QCA_0181/L50/595:600GNRA
homologous
HL_5TBW_019
NA
HL_7QCA_0191/L50/627:636No text annotation
homologous
HL_5TBW_020
NA
HL_7QCA_0201/L50/661:669No text annotation
homologous
HL_5TBW_021
NA
HL_7QCA_0211/L50/709:714Externally structured
homologous
HL_5TBW_022
NA
HL_7QCA_0221/L50/762:767No text annotation
geometric
HL_5TBW_075
NA
HL_7QCA_0231/L50/825:831GNRA
homologous
HL_5TBW_025
NA
HL_7QCA_0241/L50/847:854No text annotation
homologous
HL_5TBW_026
NA
HL_7QCA_0261/L50/1071:1076GNRA
homologous
HL_5TBW_030
NA
HL_7QCA_0271/L50/1130:1137No text annotation
geometric
HL_2Y9H_005
HL_44506.3
HL_7QCA_0281/L50/1168:1173No text annotation
geometric
HL_5U3G_001
HL_75660.9
HL_7QCA_0291/L50/1201:1208GNRA with tandem sheared
geometric
HL_5J7L_154
NA
HL_7QCA_0301/L50/1229:1238No text annotation
homologous
HL_8C3A_035
NA
HL_7QCA_0311/L50/1259:1264GNRA
homologous
HL_5TBW_036
NA
HL_7QCA_0321/L50/1305:1313No text annotation
homologous
HL_5TBW_037
NA
HL_7QCA_0331/L50/1345:1351No text annotation
geometric
HL_5J7L_143
NA
HL_7QCA_0341/L50/1382:1387UNCG variation
geometric
HL_2CZJ_007
NA
HL_7QCA_0351/L50/1411:1415No text annotation
homologous
HL_8C3A_040
NA
HL_7QCA_0361/L50/1452:1459No text annotation
homologous
HL_5TBW_041
NA
HL_7QCA_0371/L50/1470:1476GNRA
homologous
HL_5TBW_042
NA
HL_7QCA_0381/L50/1530:1535No text annotation
geometric
HL_7RQB_042
NA
HL_7QCA_0391/L50/1551:1556UNCG variation
geometric
HL_2CZJ_007
NA
HL_7QCA_0401/L50/1562:1566No text annotation
geometric
HL_6U8D_003
HL_32346.6
HL_7QCA_0411/L50/1587:1597No text annotation
homologous
HL_5TBW_046
NA
HL_7QCA_0421/L50/1608:1617No text annotation
HL_7QCA_0431/L50/1654:1663No text annotation
geometric
HL_8KAL_008
NA
HL_7QCA_0441/L50/1689:1699No text annotation
homologous
HL_5TBW_049
NA
HL_7QCA_0451/L50/1729:1735Mini UNCG
geometric
HL_5T16_002
HL_12626.2
HL_7QCA_0461/L50/1805:1814No text annotation
homologous
HL_8C3A_051
NA
HL_7QCA_0481/L50/1954:1959Mini UNCG
geometric
HL_4TUW_002
HL_12626.2
HL_7QCA_0491/L50/1987:1995No text annotation
homologous
HL_5TBW_054
NA
HL_7QCA_0501/L50/2004:2016No text annotation
homologous
HL_8C3A_056
NA
HL_7QCA_0971/L50/2043:2053No text annotation
HL_7QCA_0511/L50/2048:2051No text annotation
HL_7QCA_0521/L50/2063:2072No text annotation
geometric
HL_2ZZM_002
HL_33487.2
HL_7QCA_0531/L50/2095:2100No text annotation
HL_7QCA_0541/L50/2113:2118GNRA
homologous
HL_5TBW_059
NA
HL_7QCA_0551/L50/2143:2153No text annotation
geometric
HL_361D_002
NA
HL_7QCA_0561/L50/2208:2216No text annotation
homologous
HL_8C3A_062
NA
HL_7QCA_0571/L50/2265:2272No text annotation
homologous
HL_5TBW_062
NA
HL_7QCA_0981/L50/2286:2296No text annotation
HL_7QCA_0581/L50/2288:2294No text annotation
homologous
HL_8C3A_064
NA
HL_7QCA_0591/L50/2331:2336GNRA
homologous
HL_5TBW_064
NA
HL_7QCA_0601/L50/2390:2395GNRA
homologous
HL_5TBW_065
NA
HL_7QCA_0611/L50/2431:2436Ribsomal LSU H95
homologous
HL_8C3A_067
NA
HL_7QCA_0621/L50/2470:2484No text annotation
homologous
HL_8C3A_068
NA
HL_7QCA_0631/L50/2519:2527No text annotation
geometric
HL_5J7L_201
NA
HL_7QCA_0991/L70/32:45No text annotation
homologous
HL_8C3A_228
NA
HL_7QCA_0651/L70/36:41No text annotation
geometric
HL_5TBW_185
NA
HL_7QCA_0661/L70/86:91GNRA
homologous
HL_5TBW_186
NA
HL_7QCA_0671/S60/6:16No text annotation
HL_7QCA_0681/S60/67:73No text annotation
HL_7QCA_0691/S60/134:139No text annotation
HL_7QCA_0711/S60/188:193No text annotation
HL_7QCA_0721/S60/234:242No text annotation
HL_7QCA_0731/S60/271:276No text annotation
HL_7QCA_0741/S60/296:307No text annotation
HL_7QCA_0751/S60/317:322No text annotation
HL_7QCA_0761/S60/354:358No text annotation
HL_7QCA_0771/S60/392:402No text annotation
HL_7QCA_0781/S60/436:441No text annotation
HL_7QCA_1001/S60/530:536No text annotation
HL_7QCA_0801/S60/602:611No text annotation
HL_7QCA_0811/S60/639:644No text annotation
HL_7QCA_0821/S60/699:709No text annotation
HL_7QCA_0831/S60/750:755No text annotation
HL_7QCA_0841/S60/768:773No text annotation
HL_7QCA_0851/S60/801:806No text annotation
HL_7QCA_0861/S60/869:878No text annotation
HL_7QCA_0881/S60/963:968No text annotation
HL_7QCA_0891/S60/975:982No text annotation
HL_7QCA_1011/S60/1004:1019No text annotation
HL_7QCA_0901/S60/1009:1014No text annotation
HL_7QCA_0911/S60/1028:1034No text annotation
HL_7QCA_0921/S60/1111:1133No text annotation
HL_7QCA_0931/S60/1155:1162No text annotation
HL_7QCA_0941/S60/1197:1205No text annotation
HL_7QCA_0951/S60/1279:1284No text annotation
HL_7QCA_0961/S60/1338:1343No text annotation

Problematic loops

#loop idProblemSequence
HL_7QCA_025UNCG variation
HL_7QCA_047No text annotation
HL_7QCA_064No text annotation
HL_7QCA_070No text annotation
HL_7QCA_079No text annotation
HL_7QCA_087No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_7QCA_0011/L50/13:19,
1/L50/422:428		Triple sheared with non-canonical cWW
geometric
IL_5J7L_245
NA
IL_7QCA_0031/L50/25:26,
1/L50/383:385		Single bulged A
homologous
IL_8C3A_014
NA
IL_7QCA_0041/L50/31:33,
1/L50/375:378		Minor groove platform with extra cWW
geometric
IL_7RQB_031
NA
IL_7QCA_0051/L50/68:71,
1/L50/78:84		Kink-turn from T-box riboswitch
geometric
IL_4LCK_006
IL_51265.4
IL_7QCA_0061/L50/119:120,
1/L50/148:150		No text annotation
homologous
IL_8C3A_004
NA
IL_7QCA_1651/L50/124:130,
1/L50/137:144		8x7 Sarcin-Ricin; G-bulge
geometric
IL_8VTW_006
NA
IL_7QCA_0081/L50/174:181,
1/L50/189:195		8x7 Sarcin-Ricin; G-bulge
homologous
IL_5TBW_006
NA
IL_7QCA_0091/L50/215:216,
1/L50/229:234		No text annotation
homologous
IL_5TBW_007
NA
IL_7QCA_1661/L50/484:486,
1/L50/544:546		Isolated non-canonical cWW pair
homologous
IL_8P9A_249
IL_01003.5
IL_7QCA_1671/L50/498:501,
1/L50/515:518		No text annotation
IL_7QCA_0121/L50/553:555,
1/L50/689:691		Isolated non-canonical cWW pair
homologous
IL_8C3A_029
NA
IL_7QCA_0131/L50/555:559,
1/L50/682:689		tHW-tHW cross-strand stack
geometric
IL_5TBW_028
NA
IL_7QCA_0141/L50/562:564,
1/L50/678:679		Single bulged U
geometric
IL_7KVT_002
IL_97561.6
IL_7QCA_0151/L50/584:585,
1/L50/610:612		Single bulged G
homologous
IL_8C3A_032
NA
IL_7QCA_0161/L50/585:589,
1/L50/606:610		Triple sheared
geometric
IL_5J7L_263
NA
IL_7QCA_0171/L50/620:623,
1/L50/639:641		Major groove platform with extra cWW
homologous
IL_8C3A_034
NA
IL_7QCA_0181/L50/624:626,
1/L50/637:638		Single bulged U
homologous
IL_8C3A_035
NA
IL_7QCA_0191/L50/658:660,
1/L50/670:674		Multiple bulged bases
geometric
IL_5J7L_265
NA
IL_7QCA_1681/L50/720:721,
1/L50/810:812		Single stack bend
homologous
IL_8P9A_263
IL_15011.4
IL_7QCA_0211/L50/724:727,
1/L50/804:807		Double sheared
geometric
IL_4WF9_087
IL_58355.3
IL_7QCA_0221/L50/728:729,
1/L50/800:803		No text annotation
IL_7QCA_0231/L50/731:733,
1/L50/797:798		Single bulged G
geometric
IL_5TBW_037
NA
IL_7QCA_0241/L50/734:735,
1/L50/793:796		Stack outside cWW
geometric
IL_4KZD_006
IL_77710.2
IL_7QCA_0251/L50/739:745,
1/L50/783:789		7x7 Sarcin-Ricin with intercalated A; G-bulge
homologous
IL_5TBW_038
NA
IL_7QCA_0261/L50/745:746,
1/L50/781:783		Single bulged G
geometric
IL_5J7L_271
NA
IL_7QCA_0271/L50/747:752,
1/L50/776:780		No text annotation
IL_7QCA_0281/L50/752:754,
1/L50/774:776		Isolated non-canonical cWW pair
homologous
IL_5TBW_042
NA
IL_7QCA_0291/L50/756:760,
1/L50/769:772		No text annotation
IL_7QCA_0301/L50/817:819,
1/L50/837:839		Isolated non-canonical cWW pair
homologous
IL_8C3A_049
NA
IL_7QCA_0311/L50/866:870,
1/L50/1020:1024		UAA/GAN
homologous
IL_5TBW_048
NA
IL_7QCA_0321/L50/872:879,
1/L50/1017:1018		SSU/LSU pseudoknot
homologous
IL_8C3A_052
NA
IL_7QCA_0331/L50/885:891,
1/L50/1007:1011		No text annotation
IL_7QCA_0341/L50/891:898,
1/L50/992:1007		No text annotation
IL_7QCA_0351/L50/899:901,
1/L50/990:991		Not an internal loop
geometric
IL_4UYK_002
NA
IL_7QCA_0361/L50/1046:1048,
1/L50/1096:1099		Isolated cWS basepair
homologous
IL_5TBW_057
NA
IL_7QCA_0371/L50/1057:1064,
1/L50/1083:1087		Kink-turn
homologous
IL_5TBW_059
NA
IL_7QCA_0381/L50/1064:1066,
1/L50/1081:1083		Isolated cWH basepair
geometric
IL_4KQ0_002
IL_10892.3
IL_7QCA_0391/L50/1112:1118,
1/L50/1790:1795		7x6 Sarcin-Ricin; G-bulge
homologous
IL_5TBW_061
NA
IL_7QCA_0401/L50/1159:1162,
1/L50/1446:1447		Major groove platform; stack outside cWW
geometric
IL_4V9F_050
IL_74641.3
IL_7QCA_0411/L50/1190:1194,
1/L50/1215:1220		UAA/GAN
homologous
IL_5TBW_063
NA
IL_7QCA_0421/L50/1195:1198,
1/L50/1211:1214		Double sheared
geometric
IL_4LFB_060
IL_58355.3
IL_7QCA_0431/L50/1273:1275,
1/L50/1424:1425		Single stack bend
geometric
IL_5J7L_269
NA
IL_7QCA_0441/L50/1286:1288,
1/L50/1405:1407		Isolated non-canonical cWW pair
homologous
IL_8C3A_074
NA
IL_7QCA_0451/L50/1291:1294,
1/L50/1398:1402		tSH-tHW
geometric
IL_7RQB_057
NA
IL_7QCA_0461/L50/1320:1323,
1/L50/1372:1375		No text annotation
IL_7QCA_1691/L50/1325:1330,
1/L50/1366:1370		No text annotation
IL_7QCA_0481/L50/1337:1343,
1/L50/1353:1359		Kink-turn
homologous
IL_5TBW_073
NA
IL_7QCA_0491/L50/1489:1496,
1/L50/1782:1786		No text annotation
IL_7QCA_0501/L50/1502:1504,
1/L50/1774:1776		No text annotation
homologous
IL_8C3A_081
NA
IL_7QCA_0511/L50/1505:1508,
1/L50/1772:1773		Major groove platform; stack outside cWW
homologous
IL_8C3A_082
NA
IL_7QCA_1701/L50/1505:1513,
1/L50/1769:1773		No text annotation
homologous
IL_8P9A_305
IL_80252.2
IL_7QCA_0521/L50/1508:1513,
1/L50/1769:1772		Intercalated tWH
geometric
IL_4V9F_062
IL_28217.2
IL_7QCA_0531/L50/1525:1530,
1/L50/1535:1541		tSH-tSH-tHH-tHS
homologous
IL_5TBW_078
NA
IL_7QCA_0541/L50/1580:1581,
1/L50/1759:1761		Single bulged A
homologous
IL_8C3A_087
NA
IL_7QCA_0551/L50/1633:1636,
1/L50/1681:1682		Major groove intercalation
homologous
IL_5TBW_084
NA
IL_7QCA_0561/L50/1637:1638,
1/L50/1677:1680		Multiple bulged bases
homologous
IL_8C3A_090
NA
IL_7QCA_0571/L50/1642:1646,
1/L50/1671:1673		Major groove platform with extra pair
homologous
IL_5TBW_087
NA
IL_7QCA_0581/L50/1647:1653,
1/L50/1664:1670		No text annotation
homologous
IL_5TBW_088
NA
IL_7QCA_0591/L50/1712:1713,
1/L50/1743:1746		Bulged stacked bases
geometric
IL_4V9F_070
IL_24886.3
IL_7QCA_0601/L50/1713:1724,
1/L50/1740:1743		No text annotation
homologous
IL_5TBW_090
NA
IL_7QCA_0611/L50/1822:1824,
1/L50/2358:2360		Isolated non-canonical cWW pair
geometric
IL_4P3T_001
NA
IL_7QCA_0621/L50/1826:1829,
1/L50/2354:2356		No text annotation
homologous
IL_8C3A_096
NA
IL_7QCA_0631/L50/1831:1833,
1/L50/2349:2352		No text annotation
homologous
IL_8C3A_097
NA
IL_7QCA_0641/L50/1844:1846,
1/L50/2179:2180		Single bulged U
homologous
IL_8C3A_098
NA
IL_7QCA_0651/L50/1847:1848,
1/L50/2175:2178		Minor groove platform
homologous
IL_8C3A_099
NA
IL_7QCA_1711/L50/1858:1860,
1/L50/1975:1978		No text annotation
homologous
IL_8C3A_100
NA
IL_7QCA_0671/L50/1861:1863,
1/L50/1972:1974		Isolated cWH basepair
geometric
IL_3CZW_001
IL_10892.3
IL_7QCA_0701/L50/1985:1986,
1/L50/1996:1998		Single bulged A
homologous
IL_5TBW_098
NA
IL_7QCA_0711/L50/2037:2039,
1/L50/2057:2061		No text annotation
homologous
IL_8C3A_108
NA
IL_7QCA_0721/L50/2043:2048,
1/L50/2051:2053		No text annotation
IL_7QCA_0731/L50/2139:2142,
1/L50/2154:2156		Isolated non-canonical cWW pair
geometric
IL_4RUM_001
IL_76400.2
IL_7QCA_0741/L50/2191:2194,
1/L50/2231:2235		No text annotation
homologous
IL_8C3A_111
NA
IL_7QCA_0751/L50/2194:2196,
1/L50/2230:2231		Major groove platform
geometric
IL_5TBW_104
NA
IL_7QCA_0761/L50/2196:2198,
1/L50/2226:2230		Major groove minor groove platform with extra cWW
geometric
IL_5TBW_105
NA
IL_7QCA_0771/L50/2203:2207,
1/L50/2217:2221		No text annotation
homologous
IL_8C3A_114
NA
IL_7QCA_0781/L50/2244:2245,
1/L50/2317:2319		Major groove platform
homologous
IL_5TBW_107
NA
IL_7QCA_0791/L50/2247:2249,
1/L50/2311:2315		No text annotation
homologous
IL_8C3A_116
NA
IL_7QCA_0801/L50/2249:2250,
1/L50/2308:2311		Multiple bulged bases
geometric
IL_5TBW_109
NA
IL_7QCA_0811/L50/2259:2261,
1/L50/2276:2280		No text annotation
IL_7QCA_0821/L50/2286:2288,
1/L50/2294:2296		Isolated non-canonical cWW pair
geometric
IL_5TBW_112
NA
IL_7QCA_0831/L50/2328:2329,
1/L50/2338:2340		Single bulged A
geometric
IL_1U9S_001
IL_14190.3
IL_7QCA_0841/L50/2367:2372,
1/L50/2499:2504		Triple sheared with non-canonical cWW
geometric
IL_7A0S_018
IL_29495.2
IL_7QCA_0851/L50/2382:2390,
1/L50/2395:2401		No text annotation
IL_7QCA_0861/L50/2407:2409,
1/L50/2456:2458		Isolated non-canonical cWW pair
geometric
IL_4LFB_047
IL_68118.5
IL_7QCA_0871/L50/2411:2415,
1/L50/2452:2454		C-loop
geometric
IL_4WF9_101
IL_63596.13
IL_7QCA_0881/L50/2418:2422,
1/L50/2445:2449		tSH-tWH-tHS
geometric
IL_4V9F_022
IL_05821.2
IL_7QCA_0891/L50/2425:2427,
1/L50/2440:2442		Isolated non-canonical cWW pair
geometric
IL_4LFB_006
IL_01003.5
IL_7QCA_0901/L50/2462:2467,
1/L50/2487:2492		UAA/GAN with extra cWW
geometric
IL_7RQB_107
NA
IL_7QCA_0911/L50/2533:2535,
1/L50/2603:2604		Single bulged U
geometric
IL_5TBW_050
NA
IL_7QCA_0921/L50/2541:2542,
1/L50/2595:2597		No text annotation
IL_7QCA_0931/L50/2547:2552,
1/L50/2586:2590		tHS double platform
geometric
IL_4V9F_099
IL_48489.2
IL_7QCA_0941/L50/2556:2559,
1/L50/2579:2582		Double sheared
geometric
IL_4V9F_100
IL_58355.3
IL_7QCA_0951/L50/2560:2565,
1/L50/2574:2578		No text annotation
IL_7QCA_0961/L70/15:16,
1/L70/62:64		Single bulged A
homologous
IL_5TBW_372
NA
IL_7QCA_0971/L70/17:19,
1/L70/59:61		Isolated non-canonical cWW pair
geometric
IL_3SZX_003
IL_01003.5
IL_7QCA_0981/L70/20:27,
1/L70/52:58		No text annotation
geometric
IL_9H3G_148
IL_01750.1
IL_7QCA_0991/L70/28:29,
1/L70/48:51		Major groove minor groove platform; mini C-loop
homologous
IL_4V9F_103
IL_73108.3
IL_7QCA_1001/L70/32:36,
1/L70/41:45		Symmetric double minor groove platform
homologous
IL_7RQB_114
NA
IL_7QCA_1731/L70/72:78,
1/L70/98:103		7x6 Sarcin-Ricin; G-bulge
homologous
IL_4V9F_106
IL_02666.2
IL_7QCA_1021/L70/82:85,
1/L70/92:94		Isolated non-canonical cWW pair
homologous
IL_5TBW_378
NA
IL_7QCA_1031/S60/36:38,
1/S60/370:373		No text annotation
IL_7QCA_1041/S60/40:46,
1/S60/334:336		No text annotation
IL_7QCA_1051/S60/48:50,
1/S60/331:332		No text annotation
IL_7QCA_1061/S60/56:61,
1/S60/79:81		No text annotation
IL_7QCA_1071/S60/62:66,
1/S60/74:78		No text annotation
IL_7QCA_1081/S60/101:105,
1/S60/207:210		No text annotation
IL_7QCA_1741/S60/101:107,
1/S60/206:210		No text annotation
IL_7QCA_1091/S60/105:107,
1/S60/206:207		No text annotation
IL_7QCA_1101/S60/108:112,
1/S60/202:205		No text annotation
IL_7QCA_1111/S60/116:118,
1/S60/196:198		No text annotation
IL_7QCA_1121/S60/123:129,
1/S60/144:151		No text annotation
IL_7QCA_1131/S60/132:134,
1/S60/139:141		No text annotation
IL_7QCA_1141/S60/158:161,
1/S60/179:182		No text annotation
IL_7QCA_1151/S60/217:222,
1/S60/252:259		No text annotation
IL_7QCA_1161/S60/224:227,
1/S60/249:250		No text annotation
IL_7QCA_1171/S60/266:268,
1/S60/279:284		No text annotation
IL_7QCA_1181/S60/292:294,
1/S60/309:311		No text annotation
IL_7QCA_1191/S60/342:344,
1/S60/366:367		No text annotation
IL_7QCA_1201/S60/346:350,
1/S60/363:364		No text annotation
IL_7QCA_1211/S60/350:351,
1/S60/361:363		No text annotation
IL_7QCA_1221/S60/417:424,
1/S60/454:455		No text annotation
IL_7QCA_1231/S60/424:426,
1/S60/453:454		No text annotation
IL_7QCA_1241/S60/429:435,
1/S60/442:450		No text annotation
IL_7QCA_1251/S60/483:489,
1/S60/784:785		No text annotation
IL_7QCA_1261/S60/494:498,
1/S60/670:674		No text annotation
IL_7QCA_1271/S60/507:512,
1/S60/552:557		No text annotation
IL_7QCA_1281/S60/518:525,
1/S60/541:546		No text annotation
IL_7QCA_1291/S60/567:568,
1/S60/664:667		No text annotation
IL_7QCA_1301/S60/570:572,
1/S60/659:662		No text annotation
IL_7QCA_1311/S60/573:580,
1/S60/652:658		No text annotation
IL_7QCA_1751/S60/586:590,
1/S60/626:630		No text annotation
IL_7QCA_1331/S60/597:601,
1/S60/612:619		No text annotation
IL_7QCA_1341/S60/687:692,
1/S60/716:718		No text annotation
IL_7QCA_1351/S60/692:697,
1/S60/711:716		No text annotation
IL_7QCA_1361/S60/736:738,
1/S60/778:781		No text annotation
IL_7QCA_1371/S60/748:750,
1/S60/755:757		No text annotation
IL_7QCA_1381/S60/791:799,
1/S60/808:814		No text annotation
IL_7QCA_1391/S60/827:828,
1/S60/1233:1235		No text annotation
IL_7QCA_1401/S60/830:832,
1/S60/1230:1231		No text annotation
IL_7QCA_1411/S60/838:841,
1/S60/1220:1224		No text annotation
IL_7QCA_1421/S60/845:847,
1/S60/1181:1183		No text annotation
IL_7QCA_1431/S60/859:860,
1/S60/1090:1092		No text annotation
IL_7QCA_1451/S60/935:937,
1/S60/1071:1072		No text annotation
IL_7QCA_1771/S60/939:943,
1/S60/1067:1069		No text annotation
IL_7QCA_1781/S60/939:945,
1/S60/1061:1069		No text annotation
IL_7QCA_1471/S60/943:945,
1/S60/1061:1067		No text annotation
IL_7QCA_1481/S60/947:948,
1/S60/1057:1059		No text annotation
IL_7QCA_1491/S60/956:958,
1/S60/990:992		No text annotation
IL_7QCA_1501/S60/958:960,
1/S60/988:990		No text annotation
IL_7QCA_1511/S60/1004:1008,
1/S60/1015:1019		No text annotation
IL_7QCA_1521/S60/1022:1025,
1/S60/1037:1043		No text annotation
IL_7QCA_1531/S60/1144:1149,
1/S60/1168:1173		No text annotation
IL_7QCA_1541/S60/1150:1152,
1/S60/1165:1167		No text annotation
IL_7QCA_1551/S60/1194:1196,
1/S60/1206:1207		No text annotation
IL_7QCA_1561/S60/1239:1241,
1/S60/1324:1327		No text annotation
IL_7QCA_1571/S60/1241:1244,
1/S60/1320:1324		No text annotation
IL_7QCA_1581/S60/1245:1247,
1/S60/1317:1319		No text annotation
IL_7QCA_1591/S60/1247:1250,
1/S60/1313:1317		No text annotation
IL_7QCA_1601/S60/1254:1256,
1/S60/1307:1309		No text annotation
IL_7QCA_1611/S60/1256:1259,
1/S60/1304:1307		No text annotation
IL_7QCA_1621/S60/1265:1268,
1/S60/1295:1298		No text annotation
IL_7QCA_1631/S60/1271:1274,
1/S60/1289:1292		No text annotation
IL_7QCA_1641/S60/1275:1278,
1/S60/1285:1288		No text annotation

Problematic loops

#loop idProblemSequence
IL_7QCA_002Single bulged A
IL_7QCA_0079x8 Sarcin-Ricin; G-bulge
IL_7QCA_010Tandem non-canonical cWW pairs
IL_7QCA_011No text annotation
IL_7QCA_020No text annotation
IL_7QCA_047No text annotation
IL_7QCA_066No text annotation
IL_7QCA_068Isolated non-canonical cWW pair
IL_7QCA_069No text annotation
IL_7QCA_172No text annotation
IL_7QCA_1018x7 Sarcin-Ricin; G-bulge
IL_7QCA_132No text annotation
IL_7QCA_176No text annotation
IL_7QCA_144No text annotation
IL_7QCA_146No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_7QCA_0251/L50/21:24,
1/L50/386:402,
1/L50/409:414		No text annotation
geometric
J3_5TBW_061
NA
J3_7QCA_0011/L50/35:42,
1/L50/95:101,
1/L50/113:114		No text annotation
J3_7QCA_0021/L50/44:45,
1/L50/58:63,
1/L50/89:93		No text annotation
J3_7QCA_0261/L50/205:215,
1/L50/234:242,
1/L50/305:315		No text annotation
J3_7QCA_0271/L50/205:216,
1/L50/229:242,
1/L50/305:315		No text annotation
J3_7QCA_0281/L50/251:255,
1/L50/271:280,
1/L50/292:296		No text annotation
geometric
J3_5J7L_068
NA
J3_7QCA_0291/L50/493:496,
1/L50/520:524,
1/L50/531:537		No text annotation
J3_7QCA_0031/L50/565:571,
1/L50/656:658,
1/L50/674:677		No text annotation
homologous
J3_5TBW_004
NA
J3_7QCA_0041/L50/579:581,
1/L50/615:618,
1/L50/643:648		No text annotation
J3_7QCA_0051/L50/1146:1152,
1/L50/1465:1467,
1/L50/1479:1482		No text annotation
homologous
J3_8C3A_006
NA
J3_7QCA_0061/L50/1155:1158,
1/L50/1448:1451,
1/L50/1460:1462		No text annotation
J3_7QCA_0301/L50/1184:1189,
1/L50/1221:1225,
1/L50/1242:1243		No text annotation
homologous
J3_8P9A_055
J3_94309.2
J3_7QCA_0071/L50/1254:1257,
1/L50/1266:1271,
1/L50/1427:1431		No text annotation
J3_7QCA_0311/L50/1279:1283,
1/L50/1410:1411,
1/L50/1415:1420		No text annotation
homologous
J3_8P9A_058
J3_08594.2
J3_7QCA_0081/L50/1867:1870,
1/L50/1948:1952,
1/L50/1961:1968		No text annotation
J3_7QCA_0321/L50/2022:2024,
1/L50/2123:2134,
1/L50/2161:2166		No text annotation
homologous
J3_8P9A_061
J3_04772.2
J3_7QCA_0091/L50/2035:2037,
1/L50/2061:2063,
1/L50/2072:2077		No text annotation
homologous
J3_5TBW_013
NA
J3_7QCA_0101/L50/2254:2257,
1/L50/2282:2284,
1/L50/2298:2304		No text annotation
homologous
J3_5TBW_014
NA
J3_7QCA_0111/L50/2514:2516,
1/L50/2530:2533,
1/L50/2604:2607		No text annotation
J3_7QCA_0331/L70/9:14,
1/L70/65:66,
1/L70/109:110		No text annotation
homologous
J3_8C3A_059
NA
J3_7QCA_0131/S60/39:40,
1/S60/336:342,
1/S60/367:369		No text annotation
J3_7QCA_0341/S60/39:46,
1/S60/334:342,
1/S60/367:369		No text annotation
J3_7QCA_0141/S60/500:504,
1/S60/560:567,
1/S60/667:668		No text annotation
J3_7QCA_0351/S60/500:504,
1/S60/560:568,
1/S60/664:668		No text annotation
J3_7QCA_0151/S60/585:586,
1/S60/630:638,
1/S60/645:647		No text annotation
J3_7QCA_0161/S60/739:741,
1/S60/764:767,
1/S60/774:777		No text annotation
J3_7QCA_0171/S60/842:845,
1/S60/1183:1189,
1/S60/1212:1219		No text annotation
J3_7QCA_0181/S60/849:852,
1/S60/1099:1101,
1/S60/1176:1179		No text annotation
J3_7QCA_0191/S60/861:868,
1/S60/879:890,
1/S60/1085:1089		No text annotation
J3_7QCA_0201/S60/896:900,
1/S60/930:933,
1/S60/1074:1079		No text annotation
J3_7QCA_0371/S60/950:955,
1/S60/993:998,
1/S60/1050:1055		No text annotation
J3_7QCA_0221/S60/960:961,
1/S60/970:974,
1/S60/983:988		No text annotation
J3_7QCA_0231/S60/1002:1004,
1/S60/1019:1022,
1/S60/1043:1046		No text annotation
J3_7QCA_0361/S60/1002:1004,
1/S60/1019:1025,
1/S60/1037:1046		No text annotation
J3_7QCA_0241/S60/1101:1105,
1/S60/1139:1144,
1/S60/1173:1176		No text annotation
J4_7QCA_0011/L50/204:205,
1/L50/315:320,
1/L50/341:346,
1/L50/363:366		No text annotation
homologous
J4_8P9A_012
J4_94698.2
J4_7QCA_0021/L50/251:255,
1/L50/271:274,
1/L50/278:280,
1/L50/292:296		No text annotation
J4_7QCA_0031/L50/1119:1125,
1/L50/1142:1144,
1/L50/1484:1489,
1/L50/1786:1789		No text annotation
J4_7QCA_0041/L50/1159:1163,
1/L50/1178:1183,
1/L50/1244:1245,
1/L50/1440:1447		No text annotation
J4_7QCA_0051/L50/1162:1163,
1/L50/1178:1183,
1/L50/1244:1245,
1/L50/1440:1446		No text annotation
J4_7QCA_0061/L50/1299:1300,
1/L50/1318:1319,
1/L50/1376:1377,
1/L50/1392:1393		No text annotation
homologous
J4_8C3A_005
NA
J4_7QCA_0071/L50/1582:1586,
1/L50/1598:1602,
1/L50/1623:1627,
1/L50/1753:1758		No text annotation
homologous
J4_8P9A_017
J4_78485.2
J4_7QCA_0081/L50/1629:1631,
1/L50/1684:1685,
1/L50/1703:1712,
1/L50/1746:1751		No text annotation
homologous
J4_8C3A_007
NA
J4_7QCA_0091/L50/2025:2029,
1/L50/2083:2087,
1/L50/2108:2111,
1/L50/2120:2122		No text annotation
homologous
J4_8C3A_008
NA
J4_7QCA_0101/L50/2374:2377,
1/L50/2406:2407,
1/L50/2458:2459,
1/L50/2495:2497		No text annotation
J4_7QCA_0111/S60/29:32,
1/S60/377:388,
1/S60/406:413,
1/S60/459:462		No text annotation
J4_7QCA_0121/S60/91:99,
1/S60/212:215,
1/S60/261:264,
1/S60/286:287		No text annotation
J4_7QCA_0131/S60/118:121,
1/S60/153:158,
1/S60/182:188,
1/S60/193:196		No text annotation
J4_7QCA_0141/S60/489:491,
1/S60/677:682,
1/S60/723:734,
1/S60/783:784		No text annotation
J5_7QCA_0011/L50/476:481,
1/L50/549:552,
1/L50/692:695,
1/L50/1045:1046,
1/L50/1099:1105		No text annotation
homologous
J5_8P9A_011
J5_08384.2
J5_7QCA_0021/L50/1513:1521,
1/L50/1545:1546,
1/L50/1561:1562,
1/L50/1566:1574,
1/L50/1767:1769		No text annotation
homologous
J5_8P9A_013
J5_99177.2
J5_7QCA_0031/L50/1834:1841,
1/L50/2183:2191,
1/L50/2235:2244,
1/L50/2319:2325,
1/L50/2343:2348		No text annotation
J5_7QCA_0041/L50/1851:1854,
1/L50/1982:1985,
1/L50/1998:1999,
1/L50/2021:2022,
1/L50/2166:2172		No text annotation
homologous
J5_8P9A_015
J5_96125.2
J5_7QCA_0051/S60/52:55,
1/S60/82:89,
1/S60/289:291,
1/S60/312:315,
1/S60/324:329		No text annotation
J6_7QCA_0011/L50/33:35,
1/L50/114:119,
1/L50/150:160,
1/L50/167:171,
1/L50/198:202,
1/L50/368:375		No text annotation
J6_7QCA_0021/L50/700:705,
1/L50/718:719,
1/L50/813:816,
1/L50/840:845,
1/L50/856:860,
1/L50/1030:1040		No text annotation
J6_7QCA_0031/L50/1851:1854,
1/L50/1982:1985,
1/L50/1998:1999,
1/L50/2021:2024,
1/L50/2123:2134,
1/L50/2161:2172		No text annotation

Problematic loops

#loop idProblemSequence
J3_7QCA_012No text annotation
J3_7QCA_021No text annotation

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