HL_7QCA_006

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QCA_006 not in the Motif Atlas

Homologous match to HL_5TBW_003

Geometric discrepancy: 0.1032

The information below is about HL_5TBW_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_67216.9

Basepair signature

cWW-cWW-F-tSH

Number of instances in this motif group

9

Unit IDs

7QCA|1|L50|C|182
7QCA|1|L50|G|183
7QCA|1|L50|G|184
7QCA|1|L50|C|185
7QCA|1|L50|G|186
7QCA|1|L50|A|187
7QCA|1|L50|G|188

Current chains

Chain L50

RNA 23S

Nearby chains

Chain LAA

uL15 LAA

Chain LL0

60S ribosomal protein L13

Chain LOO

60S ribosomal protein L44

Chain LQ0

60S ribosomal protein L18