HL_7QCA_012
3D structure
- PDB id
- 7QCA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Spraguea lophii ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.78 Å
Loop
- Sequence
- GGCAGUGUGC
- Length
- 10 nucleotides
- Bulged bases
- 7QCA|1|L50|G|351, 7QCA|1|L50|C|352
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7QCA_012 not in the Motif Atlas
- Homologous match to HL_5TBW_009
- Geometric discrepancy: 0.2676
- The information below is about HL_5TBW_009
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_15076.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
7QCA|1|L50|G|350
7QCA|1|L50|G|351
7QCA|1|L50|C|352
7QCA|1|L50|A|353
7QCA|1|L50|G|354
7QCA|1|L50|U|355
7QCA|1|L50|G|356
7QCA|1|L50|U|357
7QCA|1|L50|G|358
7QCA|1|L50|C|359
Current chains
- Chain L50
- RNA 23S
Nearby chains
- Chain LAA
- uL15 LAA
- Chain LII
- 60S ribosomal protein L36
- Chain LN0
- Ribosomal protein L15
- Chain LOO
- 60S ribosomal protein L44
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