HL_7QCA_016

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

AGGAAGU

Length

7 nucleotides

Bulged bases

7QCA|1|L50|G|507, 7QCA|1|L50|A|509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QCA_016 not in the Motif Atlas

Geometric match to HL_361D_002

Geometric discrepancy: 0.2505

The information below is about HL_361D_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

7QCA|1|L50|A|505
7QCA|1|L50|G|506
7QCA|1|L50|G|507
7QCA|1|L50|A|508
7QCA|1|L50|A|509
7QCA|1|L50|G|510
7QCA|1|L50|U|511

Current chains

Chain L50

RNA 23S

Nearby chains

Chain LC0

60S ribosomal protein L4

Chain LL0

60S ribosomal protein L13

Chain LN0

Ribosomal protein L15

Chain LY0

60S ribosomal protein L26