HL_7QCA_026

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

AGUGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QCA_026 not in the Motif Atlas

Homologous match to HL_5TBW_030

Geometric discrepancy: 0.1119

The information below is about HL_5TBW_030

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7QCA|1|L50|A|1071
7QCA|1|L50|G|1072
7QCA|1|L50|U|1073
7QCA|1|L50|G|1074
7QCA|1|L50|A|1075
7QCA|1|L50|U|1076

Current chains

Chain L50

RNA 23S

Nearby chains

Chain LE0

60S ribosomal protein L6

Chain LEE

60S ribosomal protein L32