HL_7QCA_028

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

UCAUAA

Length

6 nucleotides

Bulged bases

7QCA|1|L50|A|1172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QCA_028 not in the Motif Atlas

Geometric match to HL_5U3G_001

Geometric discrepancy: 0.1369

The information below is about HL_5U3G_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.9

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

7QCA|1|L50|U|1168
7QCA|1|L50|C|1169
7QCA|1|L50|A|1170
7QCA|1|L50|U|1171
7QCA|1|L50|A|1172
7QCA|1|L50|A|1173

Current chains

Chain L50

RNA 23S

Nearby chains

Chain LLL

60S ribosomal protein L39

Chain LP0

60S ribosomal protein L17

Chain LR0

60S ribosomal protein L19