HL_7QCA_029

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

UGUAGAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QCA_029 not in the Motif Atlas

Geometric match to HL_5J7L_154

Geometric discrepancy: 0.2036

The information below is about HL_5J7L_154

Detailed Annotation

GNRA with tandem sheared

Broad Annotation

No text annotation

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

7QCA|1|L50|U|1201
7QCA|1|L50|G|1202
7QCA|1|L50|U|1203
7QCA|1|L50|A|1204
7QCA|1|L50|G|1205
7QCA|1|L50|A|1206
7QCA|1|L50|A|1207
7QCA|1|L50|G|1208

Current chains

Chain L50

RNA 23S

Nearby chains

Chain LG0

60S ribosomal protein L8

Chain LJJ

eL37 LJJ

Chain LN0

Ribosomal protein L15